Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00562 ATGTCGAACCGTCGTTCATCGTTTTCTTCCTCAACGACGTCGTCTTTGGCAAAACGCCTCTCTGGTATTTTTTCCACTTCTGTACCTTGTGCTACTAAAGTTGCTAAGACGAAGAAAGAGGCTTCATCATGTAACACTACTACAACTTGTTCTTCAATTTCAAGCAACAAGATACCGATTTTGCAGAGTGCTGTAAAGTGCAATGCTGTTGTTTTTCCGAAGCCTAGTTATGTCTCTGCAAGGGAAGAAGGTGATGCTAAGAAAGTTGTTGTTGCTGTTGCTGCTGCTGCCCCTGTTAGTGTTCATATCTCAAAAATGGATATTTCTCCTTGTAAATCAGATGGGGCATCTGTTTCCATGTCTGTGGATGAGACCATGTCTTCTTGTGAATCTTTCAAGAGCCCTGACATTGAGTATTTGGACAACAATGATATCGCGCCGGCCGTTGACTCAATTCAGAGGAAGACATTCAGCACCCTCAACATTTCTGATACTCCAGAGCCACCAGCAGGGAACATATGCAGTAGAGACATACTTGTTGAGTTGGAGAAAGATGACAAAGTTGTGAATGTTGATAACAACTTCATGGATCCCCAGCTTTGTGCAACATTTGCTTGTGATATATACAAGCACCTGCGTGCATCTGAGGCAAAGAAAAGACCTTCCACGGACTTCATGGAGAGTGTTCAGAAGGACATAAATCCAAGCATGCGTGCTATATTGATTGATTGGCTTGTTGAGGTAGCCGAAGAGTATCGATTGGTACCTGATACATTGTATTTGACAGTGAACTACATAGATAGGTATCTTTCAGGGAATCCAATGAACAGGCAAAAATTACAATTACTTGGTGTTGCTTCCATGATGGTTGCCTCTAAATATGAGGAGATTTGTGCACCCCAGGTAGAGGAATTTTGTTACATCACCGACAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTGAATTATCTGAAGTTTGAAATGACAGCTCCAACAATTAAGTGTTTCTTAAGACGGTTCGTTCGTGCAGCTCAAGGAGTCAGTGAGACCCCTTCGTTGCAACTAGAGTGCTTGACAAACTACATTGCCGAATTGTCTTTGTTGGAGTACAGTATGCTTTGTTATGCTCCGTCACTAATAGCTGCTTCTGCAATTTTTCTAGCCAAGTTTATACTCTCCCCCTCAACCAAACCATGGAATGCTACATTGAAGCACTATACACAATACCAGCCTTCTGATTTGTGTAGTTGTGTAAGGGATCTCCATCGACTTTGTTGCAACAATCCTAACTCCAATTTGCCTGCAATTAGGGAAAAGTATAGTCAGCACAAGATATGTTGA 1356 0.4181 MSNRRSSFSSSTTSSLAKRLSGIFSTSVPCATKVAKTKKEASSCNTTTTCSSISSNKIPILQSAVKCNAVVFPKPSYVSAREEGDAKKVVVAVAAAAPVSVHISKMDISPCKSDGASVSMSVDETMSSCESFKSPDIEYLDNNDIAPAVDSIQRKTFSTLNISDTPEPPAGNICSRDILVELEKDDKVVNVDNNFMDPQLCATFACDIYKHLRASEAKKRPSTDFMESVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQKLQLLGVASMMVASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNYLKFEMTAPTIKCFLRRFVRAAQGVSETPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILSPSTKPWNATLKHYTQYQPSDLCSCVRDLHRLCCNNPNSNLPAIREKYSQHKIC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00562 451 CDD CYCLIN 334 427 IPR013763 -
Adu08g00562 451 SUPERFAMILY Cyclin-like 197 333 IPR036915 -
Adu08g00562 451 PANTHER CYCLIN-A1-1 72 450 - -
Adu08g00562 451 SMART Cyclin_C_2 336 451 IPR004367 -
Adu08g00562 451 Pfam Cyclin, N-terminal domain 207 333 IPR006671 -
Adu08g00562 451 PIRSF Cyclin_A_B_D_E 8 451 IPR039361 -
Adu08g00562 451 ProSitePatterns Cyclins signature. 238 269 IPR006671 -
Adu08g00562 451 PANTHER CYCLINS 72 450 IPR039361 -
Adu08g00562 451 Gene3D - 207 449 - -
Adu08g00562 451 Gene3D - 221 334 - -
Adu08g00562 451 CDD CYCLIN 237 326 IPR013763 -
Adu08g00562 451 Pfam Cyclin, C-terminal domain 336 450 IPR004367 -
Adu08g00562 451 SUPERFAMILY Cyclin-like 336 450 IPR036915 -
Adu08g00562 451 SMART cyclin_7 340 428 IPR013763 -
Adu08g00562 451 SMART cyclin_7 243 327 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00562 Adu-Chr8 10122712 10125789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00562 1 449 Core Cell Cycle Gene Families AT1G44110 58.093 4.86e-180 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00562 K06627 - gmx:547781 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00562 08 10122712 10125789 Adu08g00562 08 10122712 10125789 ECH