LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu08g00560	ATGACGTCTGCTGCATATTTCCCTTTCAAGTTACCTTTTCTATTTATTTTATTGTGGCTGGAAAATAAGGGGAAGTTGAAGAGCTTTCACTTCAGGGCCTTGGGGTTGGAAAAATGGAAATTTGATACGAACTTACGACTCTGGCTTCTCTCACATTCATTCATCGCTTGTTACACTTCTCTCAATTTTGACTCTTTCTCTGGATTCATTGTCCGATTTCAAATTAAAAGTCAAAACTCCGATCTCTTCACGAATCCTGTTGGAGTAACCATGAGTTTCTTGAGGCCCAGTGCATTGTACTACTTCCTTGTGGCTTCTCCTTCAATGCGATGGATGCCATGTCAGAGTGGAGGCTTCTTCCGATGGCCTGGTCTTGATGGGTTCATGAGGCTCCTTCTGCTTGCGCTTCTCTGGACCATGTTCTCTGAACTTCACTACATACCCTCTTCTTCTATGTACCCTACCCTTCGTGTTGGTGATCGAATTCTCGTCGAAAAGGCTTCATTTTACCTCAGGAGTCCTGCTGTAAATGATATTGTAACGTTCCGGGATCCAACAAAGCTATCTAGAGACAAAATGGATGGTGTTTTCATTAAGAGAATTGTTGCAAAAGCCGGAGACACAGTTGAGATTCGTAATGGGGAACTCTATGTCAATGGTGTTGCACGGGATGAAGATTTCATAGCAGGTCCACCATCATACACACTGGAGTTAACTCGTGTGCCTAAAGGCCATGTTTATGTTTTGGGGGATAATCGTAACATCAGCAATGATTCCCATATGTGGGGACCACTTCCTGTGAAAAATATTATCGGAAGATATGTCATGTCTTGGCACAGACCAAGAAACATTTGA	855	0.4281	MTSAAYFPFKLPFLFILLWLENKGKLKSFHFRALGLEKWKFDTNLRLWLLSHSFIACYTSLNFDSFSGFIVRFQIKSQNSDLFTNPVGVTMSFLRPSALYYFLVASPSMRWMPCQSGGFFRWPGLDGFMRLLLLALLWTMFSELHYIPSSSMYPTLRVGDRILVEKASFYLRSPAVNDIVTFRDPTKLSRDKMDGVFIKRIVAKAGDTVEIRNGELYVNGVARDEDFIAGPPSYTLELTRVPKGHVYVLGDNRNISNDSHMWGPLPVKNIIGRYVMSWHRPRNI	284

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu08g00560	284	Gene3D	Umud Fragment, subunit A	149	280	-	-
	Adu08g00560	284	SUPERFAMILY	LexA/Signal peptidase	140	278	IPR036286	-
	Adu08g00560	284	Pfam	Signal peptidase, peptidase S26	128	278	IPR019533	GO:0004252\|GO:0006465
	Adu08g00560	284	PANTHER	SIGNAL PEPTIDASE I	91	283	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00560	284	CDD	S26_SPase_I	146	273	IPR019533	GO:0004252\|GO:0006465
	Adu08g00560	284	ProSitePatterns	Signal peptidases I serine active site.	149	156	IPR019756	GO:0004252\|GO:0016021
	Adu08g00560	284	PANTHER	CHLOROPLAST PROCESSING PEPTIDASE-LIKE	91	283	-	-
	Adu08g00560	284	TIGRFAM	sigpep_I_bact: signal peptidase I	130	278	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00560	284	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	140	156	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00560	284	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	197	209	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00560	284	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	241	260	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00560	284	ProSitePatterns	Signal peptidases I signature 3.	246	259	IPR019758	GO:0004252\|GO:0016021

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu08g00560	Adu-Chr8	10115408	10119892	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu08g00560	152	273	MADS-box Gene Family	AT1G29960	30.894	1.83e-07	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu08g00560	K03100		-	gmx:100306121	292.352

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu08g00560	08	10115408	10119892	Adu08g00560	08	10115408	10119892	ECH