LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu08g00527	ATGGTTTGTGCAGCAGAAGCACAATTAGGCCTAAACTGCCCATCAAGTTGCGGCAACGTCAGCATTCCGTTCCCGTTTGGGACCACCAGGGAGTGCTCCCTCACCCCCGAATTCCTCATCAACTGCACCAACCATGGCCCTTACTTGCCCTCCTACTTATTGGAATACAACGACTATGACTTACAAGTGCTGAACATATCTGTGGACGACGCCGAACTCCTTGTTTCGTTGCCGGTAGCCAGTGATTGCTACTACAACGACACCACAAGCATGGAACAGGACAAATTCTTGAATGATGAAATCGAGTGGCAGTTTAATTTTGGAAATTATAGCATCTCATGGAGCCGAAACGAGTTCACAACCGTTGGTTGTGACACACTGGGATTAGTGTTGACACAGGATTTTTCTGGCGATCTTAAACCCCATGTTAAGACATGCCTTTCTTACTGCGAAGATCGCGCTGATGCAATGACTGAGTCCTGTAATGGCAGTGGTTGTTGCCGTAGTGACATACCCAAGGCCGATGTCAAAGAAGAAGTGTTAACGGGAATCTCTTATGGTTTTGAAAACTCGCTACTCAACAACAGTCATACGATTGAGTACAGCCCTTGCGGTTATGCGTTTGTGGCGGAGAAAGGACGCTATGACTTTATGTCCGCAGATCTGAGTAACACGAAGTTGAGCAATACTCAGTTCCCGGTGGTGCTGGATTGGAGTGTTGGGAACCAGACCTGTGAAGAAGCCAAGAAGAATTATTCCAGCTATGCATGTAAAGGGGCAAACACCACGTGTCAGCCTTCAGAGAAGCGTCCTGGTTACCTATGCAAATGCCTTCCTGGTTTTCGGGGTAACCCTTATCACGAGGATGGTTGCCCACAAGATATTAACGAGTGCGATGGACTCAATGATTGCGTCGAACACGCAACATGCCTCAACGACCCACCAGGAAGCTACACGTGTAAGTGTCCAAAGGGTCTCAAAGGAGATGGGAGAAACAGTGGAACAAAATGCCAAAAGCCCAAACCCGACACACAGATCATACTCATAATTGCGTTGATTGTCAGTTTAAGCATCTTAGTGTTATTTGTGGCGAGCTTTAATGCTTATTGTGGATTGAGAAAAAGGAAGCTCAACAAACTTAAAGAACAGTTTTTTCAACAAAATGGTGGTCTATTGTTACAACAAAAAATTGCTAAACATAGAGGTTCAATTGAAACAACTAAAATCTTTAGCATAGAAgagctaaagaaggccaccaacaactttgatgaagtcaagatcttaggccgaggaggctatggaatagtttacaaaggattattacaagacaacacaactgttgcaatcaaaaagtccaaaatcagtgaccaaagccagattgaacaattcatcaatgaggtGGTTATACTTTCCCAAATCAACCATACAAATGTGGTCAAACTTTTGGGGTGTTGCTTAGAGACACAAGTTCCATTGCTTGTTTATGAATTCATTCAAGGTGGTACTCTTGATGATCATCTTCATGGTCAGAACCAATCTTTAAAGCTTAACTGGAAAACAAGATTGAGAATAGCAGCAGAAACTGCTGGGGCTTTGGCATACTTGCATTCTGCTACTTGTCCACCAATCATACATAGAGATGTTAAAACTACCAACATACTTCTTGATCATAATCTCAAAGCAAAGGTTTCTGATTTCGGAGCTTCAAAGATTGTTCCCCTTGATAAAGCCGAACTATCCACCCTGGTGCAAGGGACTGTGGGGTATCTAGACCCTGAATACTTCCACACAAGCCACTTAACAGAAAAGAGTGATGTGTATAGTTTCGGAGTCGTTCTAGCAGAGTTACTTACAGGACGAAAAGCACTTTGTTTTGATTTGCCTGAGGATGATAGAAACCTTGCAATGTACTTCATTTCTTCAATGAATAAGGGTCGCTTACTTCAGATTCTGGACAATCAGATAAGAAATGAGGCAAAGCCCGAGCAGCTCATGGAATTTGCCAATATTGCAAAACGATGTTTGAGGTTGAAGGGAGAAGAAAGACCTACCATGAAAGAAGTGGCAACTGAACTTGAGGGACTTAGAATAATGGAAAATCATAGGTGGGAAAGTGATAGATCGTCTTTGGAAGAGACTGAAGATTTGCTCAAT	2154	0.4006	MVCAAEAQLGLNCPSSCGNVSIPFPFGTTRECSLTPEFLINCTNHGPYLPSYLLEYNDYDLQVLNISVDDAELLVSLPVASDCYYNDTTSMEQDKFLNDEIEWQFNFGNYSISWSRNEFTTVGCDTLGLVLTQDFSGDLKPHVKTCLSYCEDRADAMTESCNGSGCCRSDIPKADVKEEVLTGISYGFENSLLNNSHTIEYSPCGYAFVAEKGRYDFMSADLSNTKLSNTQFPVVLDWSVGNQTCEEAKKNYSSYACKGANTTCQPSEKRPGYLCKCLPGFRGNPYHEDGCPQDINECDGLNDCVEHATCLNDPPGSYTCKCPKGLKGDGRNSGTKCQKPKPDTQIILIIALIVSLSILVLFVASFNAYCGLRKRKLNKLKEQFFQQNGGLLLQQKIAKHRGSIETTKIFSIEELKKATNNFDEVKILGRGGYGIVYKGLLQDNTTVAIKKSKISDQSQIEQFINEVVILSQINHTNVVKLLGCCLETQVPLLVYEFIQGGTLDDHLHGQNQSLKLNWKTRLRIAAETAGALAYLHSATCPPIIHRDVKTTNILLDHNLKAKVSDFGASKIVPLDKAELSTLVQGTVGYLDPEYFHTSHLTEKSDVYSFGVVLAELLTGRKALCFDLPEDDRNLAMYFISSMNKGRLLQILDNQIRNEAKPEQLMEFANIAKRCLRLKGEERPTMKEVATELEGLRIMENHRWESDRSSLEETEDLLN	718

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu08g00527	718	ProSiteProfiles	Protein kinase domain profile.	422	704	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu08g00527	718	SUPERFAMILY	Protein kinase-like (PK-like)	406	694	IPR011009	-
	Adu08g00527	718	CDD	EGF_CA	294	329	-	-
	Adu08g00527	718	Pfam	Protein tyrosine and serine/threonine kinase	426	692	IPR001245	GO:0004672\|GO:0006468
	Adu08g00527	718	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	543	555	IPR008271	GO:0004672\|GO:0006468
	Adu08g00527	718	ProSiteProfiles	EGF-like domain profile.	294	338	IPR000742	-
	Adu08g00527	718	SMART	egfca_6	294	338	IPR001881	GO:0005509
	Adu08g00527	718	CDD	STKc_IRAK	428	695	-	-
	Adu08g00527	718	Pfam	Wall-associated receptor kinase galacturonan-binding	13	73	IPR025287	GO:0030247
	Adu08g00527	718	ProSitePatterns	Protein kinases ATP-binding region signature.	428	451	IPR017441	GO:0005524
	Adu08g00527	718	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	12	714	IPR045274	GO:0007166
	Adu08g00527	718	SUPERFAMILY	EGF/Laminin	293	331	-	-
	Adu08g00527	718	Gene3D	Laminin	240	337	-	-
	Adu08g00527	718	SMART	serkin_6	422	698	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu08g00527	718	SMART	egf_5	244	292	IPR000742	-
	Adu08g00527	718	SMART	egf_5	297	338	IPR000742	-
	Adu08g00527	718	Gene3D	Phosphorylase Kinase; domain 1	393	497	-	-
	Adu08g00527	718	Gene3D	Transferase(Phosphotransferase) domain 1	498	715	-	-
	Adu08g00527	718	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	12	714	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu08g00527	Adu-Chr8	9557093	9569742	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu08g00527	5	717	Receptor kinase-like Gene Family	AT1G21250	46.069	0.0	565

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Adu08g00527		PK_Tyr_Ser-Thr	2.7e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu08g00527	-		-	ahf:112763858	1016.53