Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00442 ATGAACTTTCCCATAATCCTCCTCCTTCTTTTCTTCTTCTCCTTGAAGCCTCCTCAAAAACACGTTATTGTGTCATCAACCACACAAGACACATGCTTGGATGCTGTTTGCAATCTAAGGGAGCCAGTAATTCGATTCCCTTTCCAAATAGAACCAAACTCATCATCATCATCATGTGGGTACCCAGGTTTCACAGTAACATGCAACAACCGTGGCCAAACACTCCTCAACCTACCTCATTCAGGAGGAGAGTTCAGCATCAAAGGGATAGACTACGACACTCAACAAGTGTGGGTAAACGACCCTGACAATTGCCTTCCAAAACGCATACTCTCTCTCAACCTCTCTTCATCCCCATTCGAAGCCGTTTACAACCAAGAATTCACGTTCTTCAACTGTTCCATGAACTTGGAGTATCTCAAGCATAGGTACAAACCCATAGCTTGTCTCAGTGATCCAAAGCACATGTTTTTTGCAACGTCTTCGTCAACCGTTGTTGTTTACTTGTCGTCGATTTGTAACGTGGTTAAGAGGGTGAAAGTGCCGGTTGGGGTGCCGTTTTACGAACATGTTGTGTCGTCTAACCTCAGCGATGATTTGAGGTTGTCGTGGGAATGGCCAGAGTGTGGGAGGTGTGAGTCACACGGTGGAAGATGTGGCTTTGAGAGCAACACCACTTCGCATGTTATGTGTTTCAACGATTTCCCTTCAAAAGGGTTTTCTCGTTGTGCACGATATGCAATAGCTATAGGCTTAGGAGTACCAGCATTATTGTGCTTCATTGGGATACTGAGTTGCCTGTGCAGCAAGCTCAAAATCTTAGCACACCGTTGGGTCTGGGACCGTCAAACTGTACCAGATTTCGAGCCCCTTATTAGCCCACAACCAACTATAATTTTGGGCCTAGATGGGCCAACTATTGAGTCGTACCCAAAAATGGTTGTGGGGGAGAGCCCAAATATTCTTCCGAAGCCCAATGACAACACATGCCCAATATGCTTGTCGGAGTACAAGCCCAAAGAGACAGTGAAAAGAATACCTGAATGTCTTCATTGCTTTCACGCTCAATGTATTGATGAGTGGCTTCCATTGAATGCTTCTTGCCCAATTTGCCGAACTTCTCCCAACAAGTTACCTGCAGCAGCTTAA 1149 0.4543 MNFPIILLLLFFFSLKPPQKHVIVSSTTQDTCLDAVCNLREPVIRFPFQIEPNSSSSSCGYPGFTVTCNNRGQTLLNLPHSGGEFSIKGIDYDTQQVWVNDPDNCLPKRILSLNLSSSPFEAVYNQEFTFFNCSMNLEYLKHRYKPIACLSDPKHMFFATSSSTVVVYLSSICNVVKRVKVPVGVPFYEHVVSSNLSDDLRLSWEWPECGRCESHGGRCGFESNTTSHVMCFNDFPSKGFSRCARYAIAIGLGVPALLCFIGILSCLCSKLKILAHRWVWDRQTVPDFEPLISPQPTIILGLDGPTIESYPKMVVGESPNILPKPNDNTCPICLSEYKPKETVKRIPECLHCFHAQCIDEWLPLNASCPICRTSPNKLPAAA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00442 382 ProSiteProfiles Zinc finger RING-type profile. 330 372 IPR001841 -
Adu08g00442 382 SMART ring_2 330 371 IPR001841 -
Adu08g00442 382 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
Adu08g00442 382 SUPERFAMILY RING/U-box 325 375 - -
Adu08g00442 382 Pfam Wall-associated receptor kinase C-terminal 171 233 IPR032872 -
Adu08g00442 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 377 IPR013083 -
Adu08g00442 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 380 - -
Adu08g00442 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 380 - -
Adu08g00442 382 Pfam Ring finger domain 328 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00442 Adu-Chr8 7961781 7964203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00442 26 378 C3H Transcription Factor Family AT2G25410 34.711 3.96e-62 202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00442 08 7961781 7964203 Adu08g00442 08 7961781 7964203 ECH