Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00428 ATGGCTGCCGCCATTGCATTGTGGCGGTCAACCTTCTGCTGTTTCCCTCATATTCTCTATGCATTTGCGGGCTTTTTCTTCGCCTTCGCGGGGCTTGGGCTCTGGTTTCTCTCCCGTCACACTATGTTCCGCTGCGCCGCCATCGTTAAAGTTTCAACCGCTCCGTCGTCGCCGGGCAAGGGTACCGGAAACAATGCTTGCTATGTTGAGCGAATTGATGGCATTCCTAAATTACAAGGTGGTGTCTCCTCTTCTAGAAAAATGGTGCTTGTTAACTACGCAAGGTCATCTAAGGAAGCTGACGAGGTTTCCAAGGAGGGCACCGATAATGGGAGGCTCGGATTGGAGACTGACAAAGGCCAATCCTTGAAGACAAGAGACTTCTTAAGTGCTTTACTATCTAAATTCCGGAGGCACAATTTGGACAGTTTTCAAGATGTGGTCATTCACAACTTCCCTGAGGTTGCAATATCAGTGAAACCATTGAAAGTGCAAAACTGGATTCTTCCAGAGATGCCTGGACTTATAACTGATTTTCAGATATCTCTCGACGACCAGTTTCCGTACTTTGTGAATTGGCTTCATGGAAGTTCCATAGTCGCAATAGTAGAAGATGGTAACACTTGGCAATCTGAAGTTCCAGAAGTTCAGCATCTTTATGCCTCTTTTGAAGAAGAAATTGGAGTTTTTCAGTATGCAACTGCAATAACATCAAATGACATTGAGAAAATTCAGAAATTTCTAGACAAAGCTGTTGGGTCAAGCTGTGAGGGATTAATCATTAAAACTTTAGATGAAGATTCTATATATGAACCTTCCAATCGGTCAAATAATTGGCTAAAAATGAAGAAAGATTATCTGGATAACATAGGGGACTCGCTAGATTTGGTACCTATAGCTGCATTCCACGGATGTGGGAATCATACAGGTGATCATAAAGTATACTCTTCATGA 954 0.4308 MAAAIALWRSTFCCFPHILYAFAGFFFAFAGLGLWFLSRHTMFRCAAIVKVSTAPSSPGKGTGNNACYVERIDGIPKLQGGVSSSRKMVLVNYARSSKEADEVSKEGTDNGRLGLETDKGQSLKTRDFLSALLSKFRRHNLDSFQDVVIHNFPEVAISVKPLKVQNWILPEMPGLITDFQISLDDQFPYFVNWLHGSSIVAIVEDGNTWQSEVPEVQHLYASFEEEIGVFQYATAITSNDIEKIQKFLDKAVGSSCEGLIIKTLDEDSIYEPSNRSNNWLKMKKDYLDNIGDSLDLVPIAAFHGCGNHTGDHKVYSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00428 317 ProSitePatterns ATP-dependent DNA ligase signature 2. 257 283 IPR016059 GO:0003909
Adu08g00428 317 ProSiteProfiles ATP-dependent DNA ligase family profile. 217 310 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu08g00428 317 Gene3D - 56 94 - -
Adu08g00428 317 Gene3D - 211 291 - -
Adu08g00428 317 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 219 284 - -
Adu08g00428 317 Pfam ATP dependent DNA ligase domain 218 283 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Adu08g00428 317 PANTHER DNA LIGASE 1 217 310 - -
Adu08g00428 317 Pfam 56kDa selenium binding protein (SBP56) 154 197 IPR008826 GO:0008430
Adu08g00428 317 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 217 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00428 Adu-Chr8 7540587 7546850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00428 217 310 Core DNA Replication Machinery Family AT1G08130 71.277 1.06e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00428 K10747 - ahf:112716277 223.016