Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00422 ATGGACTTGGAAAGCATCGAGTGTGTGTCATCCTCGGATGGCATGGACGAGGATGAGATCCACCCTCACCATCATTCTGAGTTTCCTTCCACAAAACCACGCAATGGAGGAGCCAATAACAACAATTCTGTGGGTCCCAATGCCATAACTCCTGCAACCAGCGTCCATGAGTTGCTGGAATGCCCTGTATGTACAAATTCAATGTACCCCCCAATTCATCAGTGCCACAATGGGCACACGCTGTGTTCCACATGTAAAACAAGGGTACACAACCGGTGCCCCACTTGTAGACAAGAGCTTGGAGATATCAGGTGCCTAGCCTTGGAGAAGGTGGCTGAATCACTTGAGTTACCATGCAAGTACTATTCCCTTGGATGTCCAGAAATATCTCCATACTACAGCAAGCTTAAGCATGAGACTGTATGCAATTTTAGGCCATACAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGGGATATTCCCTTCCTCGTCGCTCATTTGAGGGACGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATAGATATGTGAAATCAAATCCCAGGGAAGTAGAGAACGCAACCTGGATGCTCACAGTATTTCATTGTTTTGGTCAGTACTTCTGCCTCCACTTTGAAGCTTTCCAGCTTGGGATGGCTCCTGTGTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAGGTTGGGGCCAATGGCAGGAAACTCATCTGGGAGGGTACGCCTAGAAGTGTTCGGGATAGCCACCGGAAAGTTAGGGATAGTCATGATGGCCTCATTATTCAACGAAACATGGCCCTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAGCTCAGAGTCACTGGAAGAATATGGAAGGAACAACAGAATCCAGATGGTGGAGTTTGCATACCAAATCTTTGTAGCTGA 972 0.4712 MDLESIECVSSSDGMDEDEIHPHHHSEFPSTKPRNGGANNNNSVGPNAITPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEISPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00422 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 167 IPR013083 -
Adu08g00422 323 MobiDBLite consensus disorder prediction 1 47 - -
Adu08g00422 323 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Adu08g00422 323 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 314 - -
Adu08g00422 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 113 IPR013083 -
Adu08g00422 323 MobiDBLite consensus disorder prediction 32 47 - -
Adu08g00422 323 SUPERFAMILY RING/U-box 53 100 - -
Adu08g00422 323 MobiDBLite consensus disorder prediction 14 30 - -
Adu08g00422 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 302 IPR008974 GO:0005515
Adu08g00422 323 CDD Sina 175 303 - -
Adu08g00422 323 CDD RING-HC_SIAHs 59 97 - -
Adu08g00422 323 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Adu08g00422 323 SUPERFAMILY TRAF domain-like 114 306 - -
Adu08g00422 323 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Adu08g00422 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00422 Adu-Chr8 7447533 7449972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00422 30 309 C3H Transcription Factor Family AT2G41980 76.429 7.11e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00422 K04506 - gmx:100810573 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00422 08 7447533 7449972 Adu08g00422 08 7447533 7449972 ECH