Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00398 ATGCTTGATAATCAAGGTGACAATGGTTTTGGCTCAGGATGTAAGCTTCAGAGAGTTAAGGTTCGGCAATGCAAGAAGCAAATGAAGGAATTGTCTGCTCTTTACATGAGACAAGATATCAAAGCGCATGAAGGTTCTATTACGACAATGAAATTCAGTCCTGATGGCCAGTATCTTGCAAGTGGCAGTGAAGATGGAGTTGTGCGCTTGTGGCAAGTGATTGAGGAGGATATGTCTAATGAAATTGACATTTCAGAAATTGACCCATCCTCCCTTTACTTTACAGTGAATAATCTCTCTGAATTGAAACCTCTGTTTATGGACAAGGAGAAAATCAACAAACTGAAGAGCATGAGAAAAACACAAGATTCAGCATGTATCATTTTCCCTCCTAAGATCTTCAGGTTGTTGGAGAAACCGTTGCATGAGTTCTATGGGCATAGAGGTGAAGTATTGGATCTCTCCTGGTCAAAGAATAATTATCTTCTCTCGTCATCCGTTGACAAAACTGTCCGTCTGTGGCAAGTGAAATCCGATAATTGCTTGAAAGTTTTCCCACACAGTAATTATGTGACATGCGTACAATTCAATCCCGTAGATGATAATTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGACGATTCCTGATTGTCGTGTCATAGATTGGACCGACATTAGAGATATAGTAACGGCAGTATGTTATCGACCCGATGGCCAGGGAGGGATTATTGGGTCCATGGCAGGAAATTGTCGATTTTATAATGTATCAGATAATCAGTTGCAGTTGGATTCCCAACTATGTTTACTTGCTAAAAAGAAATTTACTGGAAGAGGGATAACAGGCTTTCAGTTTTTTCCACAAGATTGTAACAAAGTTATGGTTACCTGTGCGGATTCACAAGTCAGAATCCTTGACGGGCTTAATGTGATTGGCAAATACAAGAGCGTAGGCACAGGGAGCCCAATGAGTGCATCTTTCACTTCTGATGGCAAACATATATTATCAGCATCCGAGGATTCTAATGTATATATGTGGAATGTTAGTCAGGAGGAGTCTATTCCCATGAAAGCTAAGAAGATTTGGTCTTCTGAGCGGTTTTTCTCAAACGCTTCCATTGCAGTGCCTTGGCAAGGTTTGAAACCTCAGACCATGGAAAATGAACACCAATGGAATGTCCTAGATAAAACTTCACCCGAATCTGTACATCTTAACCCACCTGCTTCATTCTCCCTGGGTCAAGAGTATTTCTTGGAGGCTTTGCCTAAGGGATCTGCAACTTGGCCAGAGGAGAAGCTTCCAATTTCTAGCTCCAAGGCAAAAACGTCTACAATGCTTAAATCCGAGTACAGGTTCTTGAAATCTTCATGCAGGAGTACCTCTCGTTCTCATGCATGGGGGATGGTCATTGTGACTGCAGGCTGGGACGGTCGGATAAAGACATTCCACAATTACGGATTACCCGTACCCGTTTGA 1485 0.4182 MLDNQGDNGFGSGCKLQRVKVRQCKKQMKELSALYMRQDIKAHEGSITTMKFSPDGQYLASGSEDGVVRLWQVIEEDMSNEIDISEIDPSSLYFTVNNLSELKPLFMDKEKINKLKSMRKTQDSACIIFPPKIFRLLEKPLHEFYGHRGEVLDLSWSKNNYLLSSSVDKTVRLWQVKSDNCLKVFPHSNYVTCVQFNPVDDNYFISGSIDGKVRIWTIPDCRVIDWTDIRDIVTAVCYRPDGQGGIIGSMAGNCRFYNVSDNQLQLDSQLCLLAKKKFTGRGITGFQFFPQDCNKVMVTCADSQVRILDGLNVIGKYKSVGTGSPMSASFTSDGKHILSASEDSNVYMWNVSQEESIPMKAKKIWSSERFFSNASIAVPWQGLKPQTMENEHQWNVLDKTSPESVHLNPPASFSLGQEYFLEALPKGSATWPEEKLPISSSKAKTSTMLKSEYRFLKSSCRSTSRSHAWGMVIVTAGWDGRIKTFHNYGLPVPV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00398 494 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 494 - -
Adu08g00398 494 PANTHER WD REPEAT DOMAIN 44 12 494 IPR040324 -
Adu08g00398 494 PRINTS G protein beta WD-40 repeat signature 59 73 IPR020472 -
Adu08g00398 494 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Adu08g00398 494 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Adu08g00398 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 178 - -
Adu08g00398 494 SMART WD40_4 269 309 IPR001680 GO:0005515
Adu08g00398 494 SMART WD40_4 33 72 IPR001680 GO:0005515
Adu08g00398 494 SMART WD40_4 446 486 IPR001680 GO:0005515
Adu08g00398 494 SMART WD40_4 178 217 IPR001680 GO:0005515
Adu08g00398 494 SMART WD40_4 137 175 IPR001680 GO:0005515
Adu08g00398 494 SMART WD40_4 219 258 IPR001680 GO:0005515
Adu08g00398 494 SMART WD40_4 310 350 IPR001680 GO:0005515
Adu08g00398 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 218 IPR001680 GO:0005515
Adu08g00398 494 SUPERFAMILY WD40 repeat-like 35 484 IPR036322 GO:0005515
Adu08g00398 494 Gene3D - 277 487 IPR015943 GO:0005515
Adu08g00398 494 Pfam WD domain, G-beta repeat 40 71 IPR001680 GO:0005515
Adu08g00398 494 Pfam WD domain, G-beta repeat 139 174 IPR001680 GO:0005515
Adu08g00398 494 Pfam WD domain, G-beta repeat 180 216 IPR001680 GO:0005515
Adu08g00398 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 40 73 - -
Adu08g00398 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 184 IPR001680 GO:0005515
Adu08g00398 494 Gene3D - 20 276 IPR015943 GO:0005515
Adu08g00398 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 218 - -
Adu08g00398 494 ProSitePatterns Trp-Asp (WD) repeats signature. 337 351 IPR019775 -
Adu08g00398 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 40 81 IPR001680 GO:0005515
Adu08g00398 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 359 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00398 Adu-Chr8 7184098 7188794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00398 136 347 U-box Gene Family AT2G33340 25.991 1.75e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00398 - - gmx:100817209 836.254