Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00394 ATGAGTGATGCAATAGCGGCTGAATTACTTTCCCAGGTGGTCTTAAATATATTTGATACTGTCAAATTAACGAACGAGGTTGTGATTCAGAAGGAAAATTTCAACAAGTTCTCGAATCAGTTGGAGAAGATCTCTTCTATTTTGAAGTCTTTACCAATAGAGGATATAGAGAATCCTGAGAGCTTGAAAGATGCCTTGGATGTTCTCAACCAAGCTATTACGGTTGCTAAGCAGCTGGTTTTTGAGGGGCACGGTAGAAGTAAGATTTATGTTTTGATGAATTCGAGAAGGATGGTTGCACGTTTGAAATGCTGCGGAGAAGAAATAAGGCGAGCCCTGAGGCTGATTCCTCTTGCAAGCAAAGATATAAGCGAGATGTTAGATGTGGAGTATGAAGATGAAGACGAACAAGTTTTGGAAAAAGTTGAGGGTGCGATACAAGAGAGGAATTTGGATGGAACGTATGCGAATGAGTTGTTGTGTTGTATTGCAGATGCCATGGGTGTCCCGAAGGAGAGTGATGCGTTGAAGAGAGAATTCCAAGAGTTGAAACGCGAAATGGAAAGTGCACGGTCCAGGAAAGATGTGGCAGAAGCTCTTCGCATGGAGAAGCTTATTGCAGTGCTTGAAAGGGCTGATTTGATAACCTCAGTGCAAGAGAAAGAAATTAGGTACTTTGAAAAGCGAAATTCTTTAGGCAGGACCCCTTTAGAGCCTCTGCATTCATTTTACTGTCCAATCTCTGGAGATATTATGCTGGACCCTGTTGAAACTTCTTCTCGCAAGACATTCGAGAGAAGTGCAATACAAAGGTGGTTCTCCCAAGGGAACACTCTCTGTCCATTGACCATGTTGCCCCTCGACACTCGAATCTTAAGGCCCAATAAGACTCTTCGCCACTCTATTCAAGAGTGGAAGGACAGGAATACAATCATCACCATTTCTACCATCAAGTCCCTGCTTGAAACAAATGAACAAGAGCAAGTGCTTGAATCCTTAGACAAGCTGCAGGATCTATGCTTAGAGAGACAGATACACCTAGAGTGGTTGAAAATGGAGAATTTCATAGCTCTTCTTATTGGACTTCTTGGTTCTAGAAACCGTGAAATAAGGAAGCGTGTTCTGCTCATACTGTCTTTGCTTGCAAAGGATGACACAGACAACAAGCAAGGCATTGCAAAAGTGGATGGTGCACTTCGATCGATTGTTCACTCACTTGCGCGTCAAATTGAGGAAAGCAAACTAGCATTGAAGTTGCTTTTGGAGTTATCCAAAACTAACATCTTGCTTCAACTCATAGGAAACGTTCAAGGAGGCATACTTCTAATAGTGACAATGTTAAATAGTGATGACGTTGAAGCAGCCAAAATTGCACATGAGCTTCTGGAGAACCTGTCTTTCCTTGACCAAAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTGCTACTGAACCTTTCCACAGGAGCAAAGAATGTGAAAATACTCATGGCCGAAACCGTGTCCGAAATTGAATTGACTGAGCAGAATAAATTGTCCTTAGTTAAAGATGGGGCAGTGAGACCTCTTCTTGGACTGCTCTTGGAAAATGATGTGGAAATCAAGAAAGTGGTTGTAAAGTGTTTACTTAAGCTGTCAAGCTTGCTGGAGAATGGCATGCTGATGATTAAGCAAGGTGTTACTCGACCGCTATTAGAGTTGCTATACTCTCACAGTTTACAGTCACCTGCTCTGCAGGAACTGATCGTTGCAACAATAATGCATCTTGCCATATCAACCACCCACCAACAAGCTGAAGAGGAACGTGTATTGTTGCTTGATTCGGAGGAACAAGTATATAAATTCTTCTCTCTGGTTTCTTTGACAGAACTTGATGTACAAAACATGATTCTCAAAGCCTTTCAGGCACTATGCCAGTCTCTCTCCGGCTTCACCATCAGAATGTGGTTGAGACAGATCTCGGCTGCTAAAGTATTGGTCCACTTGGTAGAGCTTAACACCCACGCAGTTCGGGTGAATGCCTTGAAGCTTTGTTATTGCTTGACAGAAGATGGTGACCACAGGAATATCTCATCACACATAACTGAAAGGTTCATTAAGGTTTTGATGAACATCATCCAAGCTTCTGATGACGCTGAAGAGATGGTTGCTGCTATCGGCATCATCTCTAGACTACCAAAGGAGACACACATAACCGAGTGGCTTCTGGATTCTGGGGCACTTCAAACTATTTCGGCATGCCTTAAAGATCAGCATAAACATGCCTCACACAGAAAGCAAGTGACAGAGAATTCTGTCGAAGCCCTTGGTCGATTTACTGTGTCGGCAAATCCGGAGTGGCAGAAGAGAGTAGCTGAAGCAGGCATGATCCCGGTGTTGGTGCAATTGCTGGCTTCTGGAACACCTCTTTCAAAACAGAAGGCAGCTATTTCGATGAAGCAGCTTTCTGAAAGCTCATACTGCTTGAGCAAGCCGATAAAGAAGGCGAGCGTTTTGAAACGGTGCTTCACAGCACAGGAAACAGGGTGCCCAGCACATTTAGGTACATGTACGATAGAGTCTTCATTCTGCATGTTACAAGGGAAGGCCTTGGAACCCCTTGTGCGGATGCTCTCGGAACAAGACGTTGGAACATGCGAAGCATCTTTAGATGCTCTAATGACTTTGCTTGACGGCCAAACACATTATAGTGGAAGTAAGGTGCTGGTGGATGCAAACGCTGTTGCACCAATGATAAAGCTCTTGAGTGTTCCAGCTTCAAGGTTGCAGGAAAAAACTCTAACAGCATTAGGCCAAATCTTTCAACTTGATGAAGTGAGAAATAAGTATAAGGCTATGGCCACAATGCCCTTGGTGGACATAACTCAGAGCAAAGACAGCCGTTTGAAAAGTCTTGCAGCTAAAGGCCTTGCTCAATTAGGTCTACTTGATAAACAATCTTCTTATTTTTAG 2958 0.4317 MSDAIAAELLSQVVLNIFDTVKLTNEVVIQKENFNKFSNQLEKISSILKSLPIEDIENPESLKDALDVLNQAITVAKQLVFEGHGRSKIYVLMNSRRMVARLKCCGEEIRRALRLIPLASKDISEMLDVEYEDEDEQVLEKVEGAIQERNLDGTYANELLCCIADAMGVPKESDALKREFQELKREMESARSRKDVAEALRMEKLIAVLERADLITSVQEKEIRYFEKRNSLGRTPLEPLHSFYCPISGDIMLDPVETSSRKTFERSAIQRWFSQGNTLCPLTMLPLDTRILRPNKTLRHSIQEWKDRNTIITISTIKSLLETNEQEQVLESLDKLQDLCLERQIHLEWLKMENFIALLIGLLGSRNREIRKRVLLILSLLAKDDTDNKQGIAKVDGALRSIVHSLARQIEESKLALKLLLELSKTNILLQLIGNVQGGILLIVTMLNSDDVEAAKIAHELLENLSFLDQNVIEMAKANYLKPLLLNLSTGAKNVKILMAETVSEIELTEQNKLSLVKDGAVRPLLGLLLENDVEIKKVVVKCLLKLSSLLENGMLMIKQGVTRPLLELLYSHSLQSPALQELIVATIMHLAISTTHQQAEEERVLLLDSEEQVYKFFSLVSLTELDVQNMILKAFQALCQSLSGFTIRMWLRQISAAKVLVHLVELNTHAVRVNALKLCYCLTEDGDHRNISSHITERFIKVLMNIIQASDDAEEMVAAIGIISRLPKETHITEWLLDSGALQTISACLKDQHKHASHRKQVTENSVEALGRFTVSANPEWQKRVAEAGMIPVLVQLLASGTPLSKQKAAISMKQLSESSYCLSKPIKKASVLKRCFTAQETGCPAHLGTCTIESSFCMLQGKALEPLVRMLSEQDVGTCEASLDALMTLLDGQTHYSGSKVLVDANAVAPMIKLLSVPASRLQEKTLTALGQIFQLDEVRNKYKAMATMPLVDITQSKDSRLKSLAAKGLAQLGLLDKQSSYF 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00394 985 Coils Coil 173 200 - -
Adu08g00394 985 SMART Ubox_2 242 305 IPR003613 GO:0004842|GO:0016567
Adu08g00394 985 ProSiteProfiles U-box domain profile. 238 312 IPR003613 GO:0004842|GO:0016567
Adu08g00394 985 SUPERFAMILY ARM repeat 482 894 IPR016024 -
Adu08g00394 985 SUPERFAMILY ARM repeat 314 420 IPR016024 -
Adu08g00394 985 Gene3D - 506 614 IPR011989 -
Adu08g00394 985 SUPERFAMILY ARM repeat 858 979 IPR016024 -
Adu08g00394 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 315 IPR013083 -
Adu08g00394 985 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 6 985 - -
Adu08g00394 985 Pfam U-box domain 243 309 IPR003613 GO:0004842|GO:0016567
Adu08g00394 985 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 985 - -
Adu08g00394 985 SUPERFAMILY RING/U-box 228 311 - -
Adu08g00394 985 Gene3D - 615 847 IPR011989 -
Adu08g00394 985 Gene3D - 848 983 IPR011989 -
Adu08g00394 985 SMART arm_5 779 819 IPR000225 GO:0005515
Adu08g00394 985 SMART arm_5 897 937 IPR000225 GO:0005515
Adu08g00394 985 SMART arm_5 426 467 IPR000225 GO:0005515
Adu08g00394 985 SMART arm_5 550 593 IPR000225 GO:0005515
Adu08g00394 985 SMART arm_5 509 549 IPR000225 GO:0005515
Adu08g00394 985 SMART arm_5 730 776 IPR000225 GO:0005515
Adu08g00394 985 CDD RING-Ubox_PUB 243 284 IPR045210 -
Adu08g00394 985 Gene3D - 316 505 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00394 Adu-Chr8 7037286 7040473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00394 241 985 U-box Gene Family AT1G76390 26.060 2.59e-50 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00394 - - adu:107460521 1821.21