Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00373 ATGGCACAAGTTCAGGTGAGCCCCAATGCGAACGGTGATTCCGCCGCCGCCGCTGCTTTTGTCCCGAACCAGTCAGTGATGACGTCACTGTACGTTGGAGATCTCGACCGCAACGTCAAGGATCCGCAGCTCTACGATCTCTTCAACCAGATCGGCCAGGTCGTCTCCGCTCGCGTCTGCAGGGACTTGGCCACCCAGCAATCCCTCGGTTACGGTTACGTCAATTTCAGTAACCCTCAAGACGCGGCAAGAGCATTGGATGTGTTGAATTTCACTCCGCTGAACAACAAACCGATTAGGATCATGTATTCTCATCGGGACCCTAGCTCCCGCACTAGCGGCGCTGCTAATATATTTATCAAGAATTTGGATAAGTCGATTGATCATAAGGCTCTGCATGATACTTTTTCCTCTTTTGGGACTATTCTTTCTTGCAAGATAGCCACAGATCCTTCTGGCCAGTCAAAAGGATTTGGCTTTGTGCAATTTGAGAAGGAAGAGTCTGCTCAAAATGCCATTGACAAGTTGAATGGAATGCTGATAAATGATAAACAGGTTTACGTGGGGCATTTTCAAAGAAAGCAGGATAGAGAGAGTGTCTTAAGCGCCAATACAAAATTTAGTAATGTGTATGTAAAGAACCTGTCAGAGTCCATGTCGGATGATAACTTGAAGAAAATTTTTGGGGAGTATGGGACAATTACTAGTGCTGTAGTGATGAGAGATTTAGACGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCTGATGATGCTGCTAAAGCTGTTGAGGCACTCAATGGAAAGAAATTTGATGATAAGGAGTGGTACGTTGGGAAAGCCCAGAAGAAATCCGAAAGGGAGCTTGCCCTGAAGGAGCGATTTGAGCAGAGTATGAAGGAAGCTGCTGACAAATATCAAGGTGCTAACTTGTATCTCAAGAACTTGGATGATAGCATCGATGATGTAAAGCTCAGGGAACTCTTCTCAGATTTTGGTACAATAACTTCATGCAAGGTTATGCGTGATCCACATGGAGTCAGTAGAGGGTCTGGGTTTGTTGCATTTTCATCTCCTGAGGAAGCTACTCGAGCTCTCGGAGAAATGAAAGGGAAATTGATTTCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGAAAGAAGAGCCAAGTTGCAGGCCCAGTTTTCTCAAATGACGCACGTATCAATGGCTCCTTCTGTTGCACCTCATCTCCCGCTCTATCCTCCAAGGGCCATGGGTCTTGGACATCCATTTTTGTATGGGCAAGCACCTCCAGCTGTCCTTCCTCAAGCTGGATTTGGTTATCAGCAGCAACTTGTGCCTGGGATGAGGCCAGGGGCTCCAATGCCAAGAACAGGTCCTGTGCAACAACCACAGCAGCCAGTGCCGATGATGCAGCAGCAGATGCTTCCAAGGGGACGTGGCCATCGTTATCCAGGTGGTCGCAACATGCAGGAGGTTCCAATGCTTGCAATGCTTGGTGAAGCTTTATACCCACTTGTTGATAAGCTGGAACATGATGCTGCAGCAAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTGTTGCATCTGATTGAGTCACCCGATGCTCTCAAGGCGAAAGTTGCCGAGGCCATGGACGTGTTGAAAAATGTTGCTCAGCAGCAAACCAATGCCCCAGCTGATCAACTCGCCTCCCTCTCTCTCAATGAGAATCTTGTCTCTTAG 1752 0.4709 MAQVQVSPNANGDSAAAAAFVPNQSVMTSLYVGDLDRNVKDPQLYDLFNQIGQVVSARVCRDLATQQSLGYGYVNFSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSSRTSGAANIFIKNLDKSIDHKALHDTFSSFGTILSCKIATDPSGQSKGFGFVQFEKEESAQNAIDKLNGMLINDKQVYVGHFQRKQDRESVLSANTKFSNVYVKNLSESMSDDNLKKIFGEYGTITSAVVMRDLDGKSKCFGFVNFENADDAAKAVEALNGKKFDDKEWYVGKAQKKSERELALKERFEQSMKEAADKYQGANLYLKNLDDSIDDVKLRELFSDFGTITSCKVMRDPHGVSRGSGFVAFSSPEEATRALGEMKGKLISGKPLYVALAQRKEERRAKLQAQFSQMTHVSMAPSVAPHLPLYPPRAMGLGHPFLYGQAPPAVLPQAGFGYQQQLVPGMRPGAPMPRTGPVQQPQQPVPMMQQQMLPRGRGHRYPGGRNMQEVPMLAMLGEALYPLVDKLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLKNVAQQQTNAPADQLASLSLNENLVS 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00373 583 Gene3D - 495 564 - -
Adu08g00373 583 SMART poly_2 497 560 IPR002004 GO:0003723
Adu08g00373 583 SUPERFAMILY PABC (PABP) domain 451 574 IPR036053 GO:0003723
Adu08g00373 583 PANTHER POLYADENYLATE-BINDING PROTEIN 17 504 - -
Adu08g00373 583 PANTHER POLYADENYLATE-BINDING PROTEIN 503 567 - -
Adu08g00373 583 Gene3D - 13 116 IPR012677 -
Adu08g00373 583 CDD RRM4_I_PABPs 310 388 - -
Adu08g00373 583 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Adu08g00373 583 Gene3D - 206 308 IPR012677 -
Adu08g00373 583 Gene3D - 309 411 IPR012677 -
Adu08g00373 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Adu08g00373 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Adu08g00373 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Adu08g00373 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Adu08g00373 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Adu08g00373 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Adu08g00373 583 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 496 IPR006515 GO:0003723
Adu08g00373 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Adu08g00373 583 CDD RRM3_I_PABPs 207 286 - -
Adu08g00373 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Adu08g00373 583 CDD RRM2_I_PABPs 114 190 IPR045305 -
Adu08g00373 583 SMART rrm1_1 117 189 IPR000504 GO:0003723
Adu08g00373 583 SMART rrm1_1 29 102 IPR000504 GO:0003723
Adu08g00373 583 SMART rrm1_1 312 384 IPR000504 GO:0003723
Adu08g00373 583 SMART rrm1_1 209 281 IPR000504 GO:0003723
Adu08g00373 583 SUPERFAMILY RNA-binding domain, RBD 28 197 IPR035979 GO:0003676
Adu08g00373 583 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 485 562 IPR002004 GO:0003723
Adu08g00373 583 SMART rrm2_1 209 281 IPR003954 GO:0003676
Adu08g00373 583 SMART rrm2_1 312 384 IPR003954 GO:0003676
Adu08g00373 583 SMART rrm2_1 117 189 IPR003954 GO:0003676
Adu08g00373 583 Gene3D - 117 205 IPR012677 -
Adu08g00373 583 PANTHER RNA BINDING PROTEIN 17 504 - -
Adu08g00373 583 PANTHER RNA BINDING PROTEIN 503 567 - -
Adu08g00373 583 CDD RRM1_I_PABPs 29 108 - -
Adu08g00373 583 Pfam Poly-adenylate binding protein, unique domain 503 557 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00373 Adu-Chr8 6547194 6550269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00373 1 578 Eukaryotic Initiation Factors Gene Family AT4G34110 62.401 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00373 K13126 - gmx:100784442 873.233