LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu08g00323	ATGGCTATCCGCGTAACCTTCTCCTTCTCCGGCTATGTCGCCCACAACCTTGTCTCCACCGCCACCTCCCGCATATCCAATTCCCGCTGCCTCCAAGAATGCTGGATCCATTCTCGCCTCTTCGGAGTTAGCCCAAAACATGACCGAGATCCCACCGCCGGTGTCCGAAGCTTCCATTCCGATCATCTCCGGCGGCCGAAGCTACGCAATCCTTGCGCCTACACCACCCTCGCCGGAGAGATTTTCGGCGATAACTGCAGCAACCCGATCGTCTTGGGCTTGATCTCCATGATGAAGTCAACGGTCGGAGTTTCTGGTTCGTCGTCGGCTTCCGTGGGTATTTTCGGTATTTCTCCCTTCAAGACCTCTTCCATCATACCTTTCTTGCAGGGTTCTAAGTGGCTTCCGTGTAACGAATCCGTCCCTAATCCTACCACCACAAACTGGGAGGTCGATAAGGGCGGAACGCTGTGTTCGGAGGAGGTGGCTGCTAGCGCTGTCTCCGCTGTTGAAGCTGGGAAGAGCAGGTGGCTCTCGCGGGTGTTGAACGTGTGTTCCGAGGATGCGAAGGCCGCGTTCACCGCCGTCACCGTTAGCTTGCTCTTCAAGTCCTTCTTGGCTGAACCTAGGTCTATTCCCTCTTCCTCTATGTACCCAACCCTCGAAGTCGGTGATCGCATTATGGCCGAAAAGTTTTCTTTCTTCTTTAGAAAGCCTAATGTTTCAGATATAGTGATTTTTAAGGCACCTCCTGTTTTACAAGAATTTGGTTTCTCTTCCTCTGATGTGTTTATAAAAAGGGTTGTAGCTAAGGCTGGAGACACTGTTGAAGTTCGAGATGGTAAATTACTTGTGAATGGCGTTGCTGAAGAAGAGGAATTCATTTTAGAGCCTCTTGCTTATGAAATGGAATTAACGGTTGTGCCAGAAGGATATGTTTTTGTGTTAGGAGATAACCGTAATAACAGCTTTGACTCACATAACTGGGGTCCACTCCCTCTTGAGAGCATTGTCCTTCCTATGATGATGAAAGGTAGTTCCAGATACATAGGTCCATTTCTTCTGAATTGA	1071	0.4949	MAIRVTFSFSGYVAHNLVSTATSRISNSRCLQECWIHSRLFGVSPKHDRDPTAGVRSFHSDHLRRPKLRNPCAYTTLAGEIFGDNCSNPIVLGLISMMKSTVGVSGSSSASVGIFGISPFKTSSIIPFLQGSKWLPCNESVPNPTTTNWEVDKGGTLCSEEVAASAVSAVEAGKSRWLSRVLNVCSEDAKAAFTAVTVSLLFKSFLAEPRSIPSSSMYPTLEVGDRIMAEKFSFFFRKPNVSDIVIFKAPPVLQEFGFSSSDVFIKRVVAKAGDTVEVRDGKLLVNGVAEEEEFILEPLAYEMELTVVPEGYVFVLGDNRNNSFDSHNWGPLPLESIVLPMMMKGSSRYIGPFLLN	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu08g00323	356	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	205	221	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00323	356	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	264	276	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00323	356	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	308	327	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00323	356	CDD	S26_SPase_I	208	338	IPR019533	GO:0004252\|GO:0006465
	Adu08g00323	356	PANTHER	THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED	1	342	-	-
	Adu08g00323	356	SUPERFAMILY	LexA/Signal peptidase	204	338	IPR036286	-
	Adu08g00323	356	TIGRFAM	sigpep_I_bact: signal peptidase I	192	338	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00323	356	ProSitePatterns	Signal peptidases I signature 3.	313	326	IPR019758	GO:0004252\|GO:0016021
	Adu08g00323	356	Pfam	Signal peptidase, peptidase S26	189	338	IPR019533	GO:0004252\|GO:0006465
	Adu08g00323	356	ProSitePatterns	Signal peptidases I serine active site.	214	221	IPR019756	GO:0004252\|GO:0016021
	Adu08g00323	356	PANTHER	SIGNAL PEPTIDASE I	1	342	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Adu08g00323	356	Gene3D	Umud Fragment, subunit A	214	346	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu08g00323	Adu-Chr8	5722745	5724531	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu08g00323	217	333	MADS-box Gene Family	AT1G29960	31.933	1.32e-09	53.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu08g00323	K03100		-	gmx:100817525	462.996

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu08g00323	08	5722745	5724531	Adu08g00323	08	5722745	5724531	ECH