Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00294 ATGGAGGCGGAGGAATCCCGGTCCCAGTTACCGGGAGACGAAGCAACAGTGGTTGAGGTAACCGCTGAGCAACTGGTGGCGAGGGCCATAGCTCCCATCAAGAAGGAATTCCTTCGCCCACCACCTGTTCGCTCTTCCTCCGCAGACAACGAAGCCGCTGCCGCCGCCACCAATGATAATAAGAACCCTGCTCATCCTGGTTCGGGTCTTCTAAAGGACAAGAAGTCCAAGCGCCAGCTCAAGCGTGAACGCCGTCAGGAGCAAAAGTCGGCACGAAACCTCTGCCCGGAAGTTGCAAAGACCGGTGATGTTACTTCATGTCCTTATAAAGACAAATGCCGCTACAGCCATGATATTGAAGCCTTCAAGGCCCAGAAACCAGCTGATCTAGAAGGACAATGTCCTTTTGTTAAGTCTGGAGGGCCTTGCCCTTATGGGTTAGCATGTAGATTTTCAAGTACCCATGAAGATGGTGTTCTTTCTTCTACTGGCCATCTCAACGGTCTTAAGAACAGTTCTGAGGTTAATGGATTGAGCAAAGATGTTCAGAAGCTTCTGTGGAAAAATAAGATGAGGTTCTCCAAGGCTGATGCCAAACTCAAAAGTCTTGGCCTCTTGTGCCCCAAGTCAAAAATGAAGGACATGGAAAATAAAGATGGTGAAAATGGCGGTTCAAATAAGTGTAGCCTTTCGGATGACAATGGGTGTTGTGAAGTAGCCTCTGACTTGGGTCCTAAGTTGGAAGAAGCTATAAAGGATGATGATGCTGATGCAAAATATGAAACCGATGAACTTTGTCCACAGAAAAGAAGAAAAACTGGAGTAAATTGTGATCCTAGTGAGATAGAAAAAGTCAATGTAACTTTTTTCCATACTGCTGAAACAGGTGTGAATGTTACTGAAGAAATTGAAAGAGGCAGCATAAATACTGAACCAGAAGCAGGATGTGATACTTTAACCATAAAAACTGATCTAAGTCTGAAGTTACATCCACGTGAAAAGAAGCTTATTGATTTTAGGGACAAATTGTATCTTGCACCCTTGACCACAGTTGGAAATCTCCCTTTTAGGAGGGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAGATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCTGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGTGCATATCCAGATACTGTGGCTCGCACTGTTGAACTAATAGAACAAGAATGTACAATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTGACAAAACCAATGCGGATGAAAAATATTGTTGAAGTAGCTTCAAGCACAGTGGATAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGAAAGAATCGCATTGATTCTCTCATTGCAGACATGGGCTCTTGGGGAGCTGGCGCAGTAACAATACATGGAAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGATTGGGATTACATATACCAGTGTGGAAGGAAGGCCCCTAATACATTGCCAGTAGTGGGGAATGGGGATGTTTTTTCGTTTGTAGACTGGAATAACCACAGAACTGCATGTCCTGAACTTGCTACCTGCATGGTTGCTCGTGGTGCTCTGATTAAACCTTGGATATTTACTGAGATCAAGGAACAGAGACATTGGGACATCAGTTCTGGTGAGCGACTAAATATTCTCAAAGAGTTTGTGCATTTTGGCCTTGAACACTGGGGATCTGACACAAAAGGAGTGGAGACGACGAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTACGTACCTGTTGGTCTTCTGGAAGTGATTCCACAACGAATAAACTGGCGTCCACCTTCTTACTATGGGCGAGATGAGCTTGAGACGCTGATGGCCTCAGACTCAGCAGCTGACTGGATACGCATATCAGAGATGCTACTAGGCAAGGTTCCGGATGGCTTTACATTTGCTCCAAAGCATAAATCAAATGCTTACGATAGAGCCGAAAATGGCTGA 2085 0.4441 MEAEESRSQLPGDEATVVEVTAEQLVARAIAPIKKEFLRPPPVRSSSADNEAAAAATNDNKNPAHPGSGLLKDKKSKRQLKRERRQEQKSARNLCPEVAKTGDVTSCPYKDKCRYSHDIEAFKAQKPADLEGQCPFVKSGGPCPYGLACRFSSTHEDGVLSSTGHLNGLKNSSEVNGLSKDVQKLLWKNKMRFSKADAKLKSLGLLCPKSKMKDMENKDGENGGSNKCSLSDDNGCCEVASDLGPKLEEAIKDDDADAKYETDELCPQKRRKTGVNCDPSEIEKVNVTFFHTAETGVNVTEEIERGSINTEPEAGCDTLTIKTDLSLKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIVEVASSTVDKPITIKVRTAYFEGKNRIDSLIADMGSWGAGAVTIHGRSRQQRYSKLADWDYIYQCGRKAPNTLPVVGNGDVFSFVDWNNHRTACPELATCMVARGALIKPWIFTEIKEQRHWDISSGERLNILKEFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYVPVGLLEVIPQRINWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00294 694 ProSitePatterns Uncharacterized protein family UPF0034 signature. 426 444 IPR018517 GO:0008033|GO:0017150|GO:0050660
Adu08g00294 694 Gene3D Aldolase class I 338 580 IPR013785 -
Adu08g00294 694 CDD DUS_like_FMN 342 577 IPR035587 -
Adu08g00294 694 MobiDBLite consensus disorder prediction 31 94 - -
Adu08g00294 694 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 26 694 - -
Adu08g00294 694 Gene3D - 84 163 - -
Adu08g00294 694 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 26 694 - -
Adu08g00294 694 ProSiteProfiles Zinc finger C3H1-type profile. 89 120 IPR000571 GO:0046872
Adu08g00294 694 Pfam Dihydrouridine synthase (Dus) 345 582 IPR035587 -
Adu08g00294 694 MobiDBLite consensus disorder prediction 50 64 - -
Adu08g00294 694 SUPERFAMILY FMN-linked oxidoreductases 342 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00294 Adu-Chr8 5182239 5186909 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu08g00294 Dus 1.1e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00294 K05544 - gmx:100783494 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00294 08 5182239 5186909 Adu08g00294 08 5182239 5186909 ECH