Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00277 ATGGAAACTGGGGATGACAATAGCAATGCCGATAGCCCTGAACGTACGGCAGGGATGGAGGGGTGCTTGTATTCCGAAGCTGTAAATAATGGAGTGGTAATTGTTGATGGGAGTGGTCCTGATGAGAGCAAAGAAATTAGGCATTCGAAGAAGGAAGCTGTAAATACCAGAGTGTCAACTGCAGATGGGCGTTTTCGGACATACAAGAGGCGGAAACATGTAAAGATGAGTTGTTCAGAAAGCAAAGCTCAGGAAGAAAGCAGAGTGTGTGTGGAAGCCGCAAGTCACTTTTCAGAACAGGCTGTGAAGAAACCATATGGTATAGCTGTAGGAAATACTTCAAAAGATAATTCAAATGGACATTGGGGGAATGTTGTACTAAATCATTTATATCATTCATTAGGCAATGATAACAGTGGCACAAAGTGGTGCATAAAGGAAGCACTGATGAGTAATCCAAAATCCATTACCGACATGGAAACTTCTAAAATTGACAAAGATGGCCAAGAATGCTCGTCACACTTCGACTGTTCCTCTCATAGGTTACAGTTTGAAGCTAATGGGCATGCATATGTCATGCATGGTGGATGTTCAAGTGAATCAGATGGCAATGGTCTTACTAAGAAGTGTCAGCGTGTGTTCCATAATATCTTAGCCTCTGAAAAATTCAGTTCATTATGTAAGGTGCTACTAGAAAATTTTCATGGAATGAAACCTGAAAGTGTAGTTGACTTTAGTGTCATAAATTCAAGGATGACAGAAGAAGCTTATGAACAATCACCCACACTTTTCTTGTCAGATTTTCAACAGGTTTGGAGAAAGCTTGAAAACACTGGAAATGAGATTGTTGCTATAGCAAAGAGTCTTTCCAACTTGTCAAGAGCGTATTACTTAGAGCATGTGGGAGTTCCTGGACACAGTTCATTTGAGGATCAAAAACAAGTGTTCCATAACTATGCATTGGACAATGTTATGAGACCACAGCAGACAGAAGTTTGTGCTACAGATAAAGTCTGCAGTTGCAGGCATTGTGGAGGCAAGGCAGATGGGACAGACTCCTTGATTTGTGATTCATGTGAGGAGATGTACCATGTATCTTGTATTGTGCCGGCTTTGAAGGAATTACCTGAAAAAAGCTGGTTCTGTGCCAATTGTACTGCTATTGAAATAAGATCTCCACATGATAATTGTGTGGTGTGTGAAAGGTTGAATGCCCCAAAGTCCTTGAACAACATTGTTGGTGATGAGAGCATTCCTACAAATGATGAAACACACAATGAATTGGAGGAAAATTCAAATTGTACATATGGGATCGAGGTGTCCATAGGGAGAAGAAACTTGCCTGATTGCAAAATTTGTAGGGAGGAAGTAGATGGAGAAGATGTACGGATATGCGGTCACAATTCATGCCCTAGTAAATACTATCATGTAAGGTGTTTGTCCACTAAGCAGGTCCAGTCATATGCTCACTGTTGGTACTGCCCTTCTTGTTTATGTCGAGTTTGCCTCGTTGATCGAGATGATCACAAGATTGTTCTCTGTGATGGTTGCGACCATGGATACCACATCGATTGCATGGAGCCTAAACGGACTACCATTCCAAAAGGCAACTGGTTCTGCAGAAAATGCGATGCAGGGATCCAAGCAATACGCCGGGCTAAAAAGACATATGAGAATTTCAATTTTAGAACTGGCGAAGATGTTTCAAAGCCTAAGTATAAGCTTGGTAAGAAATGGAAACAAGGACGAGAATTGGAGAAAGATGGAGGAATGGACATGCTTTTAACAGCAGCCAACACACTTAAATTTGAAGAGAACTTGGCTAGTAGCTAG 1833 0.4124 METGDDNSNADSPERTAGMEGCLYSEAVNNGVVIVDGSGPDESKEIRHSKKEAVNTRVSTADGRFRTYKRRKHVKMSCSESKAQEESRVCVEAASHFSEQAVKKPYGIAVGNTSKDNSNGHWGNVVLNHLYHSLGNDNSGTKWCIKEALMSNPKSITDMETSKIDKDGQECSSHFDCSSHRLQFEANGHAYVMHGGCSSESDGNGLTKKCQRVFHNILASEKFSSLCKVLLENFHGMKPESVVDFSVINSRMTEEAYEQSPTLFLSDFQQVWRKLENTGNEIVAIAKSLSNLSRAYYLEHVGVPGHSSFEDQKQVFHNYALDNVMRPQQTEVCATDKVCSCRHCGGKADGTDSLICDSCEEMYHVSCIVPALKELPEKSWFCANCTAIEIRSPHDNCVVCERLNAPKSLNNIVGDESIPTNDETHNELEENSNCTYGIEVSIGRRNLPDCKICREEVDGEDVRICGHNSCPSKYYHVRCLSTKQVQSYAHCWYCPSCLCRVCLVDRDDHKIVLCDGCDHGYHIDCMEPKRTTIPKGNWFCRKCDAGIQAIRRAKKTYENFNFRTGEDVSKPKYKLGKKWKQGRELEKDGGMDMLLTAANTLKFEENLASS 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00277 610 SUPERFAMILY FYVE/PHD zinc finger 336 387 IPR011011 -
Adu08g00277 610 ProSiteProfiles Zinc finger PHD-type profile. 338 388 IPR019787 -
Adu08g00277 610 Gene3D - 240 388 - -
Adu08g00277 610 SMART PHD_3 499 544 IPR001965 -
Adu08g00277 610 SMART PHD_3 449 498 IPR001965 -
Adu08g00277 610 SMART PHD_3 340 386 IPR001965 -
Adu08g00277 610 ProSiteProfiles Zinc finger RING-type profile. 450 497 IPR001841 -
Adu08g00277 610 PANTHER D4, ISOFORM A 125 605 - -
Adu08g00277 610 PANTHER HISTONE ACETYLTRANSFERASE 125 605 - -
Adu08g00277 610 ProSiteProfiles Zinc finger PHD-type profile. 496 546 IPR019787 -
Adu08g00277 610 SUPERFAMILY FYVE/PHD zinc finger 498 552 IPR011011 -
Adu08g00277 610 Pfam PHD-finger 499 544 IPR019787 -
Adu08g00277 610 Pfam PHD-finger 341 386 IPR019787 -
Adu08g00277 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 502 IPR013083 -
Adu08g00277 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 566 IPR013083 -
Adu08g00277 610 SUPERFAMILY FYVE/PHD zinc finger 437 498 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00277 Adu-Chr8 4816551 4826322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00277 498 565 C2H2 Transcription Factor Family AT3G01460 39.706 1.22e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu08g00277 PHD 6.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00277 - - lang:109337790 768.844