Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00260 ATGTCGGGATCGGAGATGGGAAGAAGAGAAGGCTTCACCGTTGGGCTTCACAGCCATAACAGCATGCGTTTGGACTTTTCTGATGGCCCTGCTCTCTACAGCAACAGCAACAACAACCCTCTTGCGCCACCTTCTGCTTCTCCAACTTACCACCCTTCCACCGCAGTCACCGCTGCACCTATCAACATCAATGGCAGCGCGGTTGGCGGCATGGAATCGTTGGCGGCGCTGCCACAGGGCGGCCACATCGGGAGTAGCTCTGAGCCGAAGAAGAAGAGAGGGAGGCCAAGGAAATACGTACCGGATGGTGGCGGCGTAGGGTTAGGGTTGAATCCAGATTCTTCTGCTCCTGGTATGACCGTTAACCATAGCCAGAACCAGAATCCGAATCTGAATTCGAGCTTGAACCAGAATCAGTCCGGTGGCGGAGCTATGTCGCCGGCAATTGCTTCCGCCACACCTAATTCTAATTCCGGGAAGAAAAGGGGAAGGCCTCGTGGCTCTCTCAACAAGCATCCTCACTTAAAGGGTCTTGGATTGGCAAAACTTACTTTCACTCCGCATGTTCTTACTGTGAAATCTGGAGAGGATCTGGGAGTAAAGGTTACGTCCATCTCCATGGATGGTCCAAGAAATATTTGTATCTTAACAGCAAATGGAACCATATCTAATGTAACACTTAGCCAACCTTCGATACCTGGAGGAACTGTGACCTATGAGGGACGATTTGAGATCCTGGCACTCTGTGGTTCTTTTCTTCTTTCTGAAAATGGTCAGTTCCAAAGAACTGGTTCTTTAAGTCTGACCTTGTCTGGGCCTGATGGTCGGGTTATGGGTGGTGCAATCGCAGGTGTTTGTGTAGCTGCTTCCCCAATTCAGATAGTTTTCGCAAGCTTCCTTGTAGATGGTGGTTACAAGAAAATGAAGTCATCGAACCAGAACCAGAACCAGAACCAGAACCAGATGGGGACCTTACCTTCCTCCCCTAATGTTCTCCCGGCTGGTCAAAGCAGCTCGCCATCGCATGGCACTCTTAGTGAATCTTCTGGTGGAGCCGGCAGCCCACTTAACCTGAGTACAGATGTTTGCAATAACAATAACACCCCACAAGGAATTTCCGGAATGCCCTGGAAATGA 1137 0.5013 MSGSEMGRREGFTVGLHSHNSMRLDFSDGPALYSNSNNNPLAPPSASPTYHPSTAVTAAPININGSAVGGMESLAALPQGGHIGSSSEPKKKRGRPRKYVPDGGGVGLGLNPDSSAPGMTVNHSQNQNPNLNSSLNQNQSGGGAMSPAIASATPNSNSGKKRGRPRGSLNKHPHLKGLGLAKLTFTPHVLTVKSGEDLGVKVTSISMDGPRNICILTANGTISNVTLSQPSIPGGTVTYEGRFEILALCGSFLLSENGQFQRTGSLSLTLSGPDGRVMGGAIAGVCVAASPIQIVFASFLVDGGYKKMKSSNQNQNQNQNQMGTLPSSPNVLPAGQSSSPSHGTLSESSGGAGSPLNLSTDVCNNNNTPQGISGMPWK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00260 378 SUPERFAMILY AF0104/ALDC/Ptd012-like 185 300 - -
Adu08g00260 378 MobiDBLite consensus disorder prediction 30 53 - -
Adu08g00260 378 PANTHER OS08G0512400 PROTEIN 21 377 - -
Adu08g00260 378 MobiDBLite consensus disorder prediction 76 174 - -
Adu08g00260 378 MobiDBLite consensus disorder prediction 115 163 - -
Adu08g00260 378 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 21 377 IPR039605 GO:0003680
Adu08g00260 378 Pfam Plants and Prokaryotes Conserved (PCC) domain 187 299 IPR005175 -
Adu08g00260 378 Gene3D - 187 318 - -
Adu08g00260 378 MobiDBLite consensus disorder prediction 1 53 - -
Adu08g00260 378 MobiDBLite consensus disorder prediction 308 378 - -
Adu08g00260 378 ProSiteProfiles PPC domain profile profile. 181 321 IPR005175 -
Adu08g00260 378 CDD DUF296 186 299 IPR005175 -
Adu08g00260 378 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Adu08g00260 378 SMART AT_hook_2 159 171 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00260 Adu-Chr8 4386383 4389836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00260 28 378 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 45.278 9.81e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00260 - - ahf:112705741 692.189