Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00258 ATGCTATCAATGGAAGAGCTAGCGTGTGAGCTGAGTGATCATGAAAAGAGAAACGCTCAAGGTTTGCCACCCGGTTTCAGGTTTCACCCAACTGATCAAGAACTCATTACCTTCTATTTGGCTTCCAAGGTCTTCAATACTACTACTACTACTACTCATGTCAACTTTGTGGAGGTTGATCTCAATCGATGCGAGCCATGGGAACTTCCAGAAGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTACAGTGTGAGAGACAGAAAATACCCAACGGGCCTCAGAACTAACAGAGCAACCGCTGCTGGGTACTGGAAGGCTACCGGCAAGGACAAGCAAGTATACGGCGGCGGTGGCCTTGTTGGGATGAAGAAGACGTTGGTGTTCTACAAAGGGAGGGCCCCCCGCGGTCAGAAGACTAAATGGGTAATGCATGAGTTCCGGTTGGACCCTCACAGCTCTCCTTCCCTCTCTAAGGATGAGTGGGTAATATGCAGAATATTTCATAAAAGTGGGGAAAAGAGAACTCCTACTACTACTCCTGCTCCTCTGCTACTTCATCATCAACAACACGATCCATCATCACTGTTCAATGACCATATCTCCCACTCTCATAATCATAATCAAAACCTCCTCTCGCCATTGCTTCATCCTTTCCCAATCCCTGAAGAAACCACTAAAACCAAATCATCAACAATTAACAGCAACCATTACCCTCCACCACCACCTTCCTCCCAACACTTGCTTAAGCTCAATAAGTCTACTAAATTAACAAAAACAGTGCCTCCTTCTCCATCATTCTTCCAATACCAACAGCTTCTAGAAGATGATCCCAACTTATTGCATTGGATGGACAGTGGTAATAATAATAATAATAACTGCAAGGCTAATAATACTGCTAGTAGTGTTGAGATAATGGATGCTGCTGCTGCTGGCTTGATAGCATTCTCATCAGGAGGACCTTCACCTACTCCTACTAATAATAATAATAACAATTCTGAAATAATAAGGGACATGATGATGATGTCTTCTTCTTCGGCTTCTATGCTGCACATACTCGACGATGCTCCTCTTGGAATTCAATCTTGGCCTCATCATCATCATCATCACCTTCTGTAA 1119 0.4415 MLSMEELACELSDHEKRNAQGLPPGFRFHPTDQELITFYLASKVFNTTTTTTHVNFVEVDLNRCEPWELPEVAKMGEREWYLYSVRDRKYPTGLRTNRATAAGYWKATGKDKQVYGGGGLVGMKKTLVFYKGRAPRGQKTKWVMHEFRLDPHSSPSLSKDEWVICRIFHKSGEKRTPTTTPAPLLLHHQQHDPSSLFNDHISHSHNHNQNLLSPLLHPFPIPEETTKTKSSTINSNHYPPPPPSSQHLLKLNKSTKLTKTVPPSPSFFQYQQLLEDDPNLLHWMDSGNNNNNNCKANNTASSVEIMDAAAAGLIAFSSGGPSPTPTNNNNNNSEIIRDMMMMSSSSASMLHILDDAPLGIQSWPHHHHHHLL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00258 372 SUPERFAMILY NAC domain 17 170 IPR036093 GO:0003677|GO:0006355
Adu08g00258 372 MobiDBLite consensus disorder prediction 205 248 - -
Adu08g00258 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 298 - -
Adu08g00258 372 ProSiteProfiles NAC domain profile. 22 170 IPR003441 GO:0003677|GO:0006355
Adu08g00258 372 Gene3D NAC domain 31 174 IPR036093 GO:0003677|GO:0006355
Adu08g00258 372 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Adu08g00258 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 12 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00258 Adu-Chr8 4352902 4354373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00258 1 175 NAC Transcription Factor Family AT1G76420 71.348 7.29e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Adu08g00258 NAM 3.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00258 - - aip:107607453 639.417