Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00254 ATGACTCGTCCCTTGAGAATTTTAGGCGAGCGCAACTCGTCAACCACCGACAACGCCCCCTCCGTCGTCGACTCCGACTTCGTCGTCATCCTCGCCGCCCTCATCTGCGCTCTCATCTGCGTTCTCGGACTGGTCGCTGTAGCTCGCTGCGCTTGTCTCCGCCGCCTCCGCCTCTCATCCTCCTCCGCCGCCGCTACTCCCTCGCTTCCCGCAGCTGCCAACAAAGGTGTCAAGAAGAAGGTACTCAGCTCTCTCCCCAAGGTCACCGCCACAGTCGAGTCGGCTGGCAAGTTCTCCGACTGCGCGATCTGCCTGGCGGAGTTCGCAGCCGGAGATGAGATCCGAGTGCTGCCTCAGTGTGGCCACGGCTTCCACGTGTCGTGTATCGACGCGTGGCTGAGGTCGCATTCATCGTGTCCATCGTGCCGTCAGATTCTGGTGGTTCCGAGATGCAACAAGTGCGGTGGTTTTCCAGCACCCGCGAGCTCGAGCACCACCGCCACCGCCTCTCAGCCACCGGAATCGGATTCCACATTCAAGTTGCCAGGAGGGAAAAGGAGTGGAGAAAAGAATTTTGGGACCCTCTCCAAAGCTTTATTTTTGTGCTTTCCAGGATCCTACCCTAGACAAAGTCACTCCCACTAA 645 0.5891 MTRPLRILGERNSSTTDNAPSVVDSDFVVILAALICALICVLGLVAVARCACLRRLRLSSSSAAATPSLPAAANKGVKKKVLSSLPKVTATVESAGKFSDCAICLAEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVPRCNKCGGFPAPASSSTTATASQPPESDSTFKLPGGKRSGEKNFGTLSKALFLCFPGSYPRQSHSH 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00254 214 SUPERFAMILY RING/U-box 94 149 - -
Adu08g00254 214 SMART ring_2 101 142 IPR001841 -
Adu08g00254 214 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 173 - -
Adu08g00254 214 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Adu08g00254 214 CDD RING-H2_PA-TM-RING 100 143 - -
Adu08g00254 214 MobiDBLite consensus disorder prediction 162 177 - -
Adu08g00254 214 MobiDBLite consensus disorder prediction 162 187 - -
Adu08g00254 214 Pfam Ring finger domain 100 143 IPR001841 -
Adu08g00254 214 PANTHER RING-H2 FINGER PROTEIN ATL8 1 173 - -
Adu08g00254 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00254 Adu-Chr8 4266247 4267360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00254 1 154 C3H Transcription Factor Family AT1G20823 65.854 2.65e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00254 - - gmx:100812940 205.682