Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00241 ATGATGGCTTCAAGCTGGGATGGAAGCAATGACCCTGGCAGCCAGTCAGATGATAGCTTTCATTTCGATAGGTTGCACATTGAGCCCATTTATGATGCTTTCGTGTGTCCTCTGACAAAGCAAGTTATGCGGGACCCTGTAACGTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAGTGGTTCAAGGAATGCAAGGAAAGTGGACGGCAACTTGTTTGTCCGTTGACTCTGCAGGAGTTAAAGAGTGCAGAACTGAATCCAAGTATGGCTCTGCGAAACACCATTGAAGAGTGGACGGCCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGCTCGTTGAATATGGGAAGTCCAGAAAGTGATACGCTTCAGACTTTAAAGTATATCCAGCACATATGCCGAAGAAGCAGGTCAAATAAGCATAATGTCCGCGGTGCAGGGCTCATACCCATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGATACGATGTAGAGCTTTGGAAACTCTTAGAGTTGTGGTAGAGGAAGACGATGAAAATAAGGAATTGTTGGCGGAAGGTGACACTGTGCGTACAGTTGTAAAATTCCTGTCTCATGAGCTTTCAAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTCTCAAAATCTGAAACCCTATGTGAGAAGATTGGTTCAATTAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAATTCAGAAGATCTTTCTACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAATAACGTACGGCAGATGGCTGAAAATGGTAGATTGAAGCCTCTTCTGACCCAACTTCTTGAAGGTCCACCGGAAACAAAACTTTCAATGGCTGGATTCCTTGGTGAGCTGGTTTTAAACAATGACGTCAAAGTCCATGTTGCTAGAACTGCAGGTTCATCTTTGATCAATATAATGAAAAGTGGTAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCGTGCGAGCCAAGTGCAAAGGTTCTTATCGAAGCGGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCAAATCAGCTTCCAACACGATTAAAAGAGGTTGCTGCTACAATTCTTGCCAATGTGGTGAACTCAGGGGAAGACTTTGACTCAATTCCTTTCGGACCTGGTCACCAAACTCTGGTCTCAGAGGACATAGTTCATAATCTACTTCATCTCATAAGCAATACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTCGGACTCACTAATTCTCCAACCACAGTTCTGAGTGTGGTTTCTGCTATCAAAAGTTCTGGCGCCACTATCAGTTTAGTTCAATTCATTGAGGCTCCACAGAAAGATCTGCGTGTAGCTTCCATAAGACTTCTTCGAAATCTCTCACCCCACATGGGTCAGGAACTAGCCGATGCTCTACGTGGCTCAGTCGGACAGCTTAGTGGTCTAGTTAAAGTCATATCAGAGAGTACAGGAATCACTGAAGAGCAGGCAGCAGCTGTTGGCCTTTTAGCGGATCTTCCTGAGAGGGATTTGGGACTCACAAGGCAGCTGCTAGATGAAGGTGCATTTCAGCTGGTCATATCTAGGGTGATTGCCATCAGGAAGGGTGAGATCAGGAGCAGTCGCTTCATGACACCATTTCTTGAAGGGCTTGTGAAGATCCTTGCAAGGGTTACATATGTCATCGATCAGGAGCCAGAAGCCCTTGCACTCTGTCGTGACCACAATCTTGCTGCATTGTTTATTGAAATGCTTCAAACTAACGGACTTGATAATGTACAGATGGTTTCCGCCACAGCTTTAGAGAACCTGTCCCAAGAGTCAAAAAATTTAACAAAGTTGCCTGATTTGCCACCGCCAGGTGTTTGTGCTTCAATCTTTACATGCTGTTACACACAACCGGTCATTACTGGACTGTGTAGAATTCATAGAGGATTGTGCTCTTTAAAAGAAACATTTTGCCTTTTTGAAGGGCAAGCAGTCCTTAAGTTGGTAGCTCTACTGGACCACACGAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTAGCTACTCTTATAGATGATGGAGTGGATATTGAACAAGGAGTACAGGTGTTGTTGGATGCGGAGGGAGTGAGGCCTATACTCGATGTGTTACTCGAGAAACGGACAGAGAACTTGCGGAGGAGGGCAGTCTGGGCAGTGGAGAGATTGTTGCGAACAGAGGATATAGCCTATGAAGTTTCAGGCGATCAAAATGTGAGCACTGCACTTGTGGATGCTTTCCAGCATGGCGACTACCGAACAAGGCAGATTGCGGAGCGTGCCCTCAAGCATGTTGATAAGATACCAAACTTCTCCGGAATCTTCCCAAACATGGGAGGAGCGTAA 2448 0.4502 MMASSWDGSNDPGSQSDDSFHFDRLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRQLVCPLTLQELKSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNMGSPESDTLQTLKYIQHICRRSRSNKHNVRGAGLIPMIVDMLKSSSRKIRCRALETLRVVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSNSEDLSTVEKADKTLENLEKCENNVRQMAENGRLKPLLTQLLEGPPETKLSMAGFLGELVLNNDVKVHVARTAGSSLINIMKSGNMQSREAALKALNQISCEPSAKVLIEAGILSPLVNDLFAVGPNQLPTRLKEVAATILANVVNSGEDFDSIPFGPGHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTNSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRVASIRLLRNLSPHMGQELADALRGSVGQLSGLVKVISESTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFQLVISRVIAIRKGEIRSSRFMTPFLEGLVKILARVTYVIDQEPEALALCRDHNLAALFIEMLQTNGLDNVQMVSATALENLSQESKNLTKLPDLPPPGVCASIFTCCYTQPVITGLCRIHRGLCSLKETFCLFEGQAVLKLVALLDHTNVNVVEAALAALATLIDDGVDIEQGVQVLLDAEGVRPILDVLLEKRTENLRRRAVWAVERLLRTEDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMGGA 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00241 815 SUPERFAMILY ARM repeat 123 444 IPR016024 -
Adu08g00241 815 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Adu08g00241 815 SUPERFAMILY ARM repeat 457 799 IPR016024 -
Adu08g00241 815 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Adu08g00241 815 Gene3D - 117 320 IPR011989 -
Adu08g00241 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 116 IPR013083 -
Adu08g00241 815 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 811 - -
Adu08g00241 815 SMART arm_5 672 713 IPR000225 GO:0005515
Adu08g00241 815 SMART arm_5 182 222 IPR000225 GO:0005515
Adu08g00241 815 SMART arm_5 717 759 IPR000225 GO:0005515
Adu08g00241 815 SMART arm_5 267 307 IPR000225 GO:0005515
Adu08g00241 815 SMART arm_5 347 392 IPR000225 GO:0005515
Adu08g00241 815 SMART arm_5 140 180 IPR000225 GO:0005515
Adu08g00241 815 SMART arm_5 446 487 IPR000225 GO:0005515
Adu08g00241 815 SMART arm_5 590 631 IPR000225 GO:0005515
Adu08g00241 815 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 811 - -
Adu08g00241 815 Coils Coil 257 277 - -
Adu08g00241 815 Gene3D - 573 803 IPR011989 -
Adu08g00241 815 SUPERFAMILY RING/U-box 25 111 - -
Adu08g00241 815 Gene3D - 321 487 IPR011989 -
Adu08g00241 815 CDD RING-Ubox_PUB 34 81 IPR045210 -
Adu08g00241 815 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00241 Adu-Chr8 4125583 4129498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00241 3 813 U-box Gene Family AT1G76390 64.373 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00241 - - adu:107460240 1564.67