Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00236 ATGTCTCCACAAGTACCACACTCCAGACCCAAAAAGAACCTCGTTATTAGGCACAATCTTTCTAAACCAAGTCTCAATGGAGTGCAAACTAACGAACACCCCTTATTTCTCTCTCTTCCTTTTCCTCTCTCTCGCTATCTCTCCCAAACCCTACCTTCTCAACCCCATTTTCCACCTTCTGCTCCCGTCATGAAAGGTGCAAAGTCCAAAGCCGAATCCAAGAGAGGCGATGCCAAGCTTGCCGTGAATAAGAAAGGAACTCCGGCCACGAAGGGCGGTAGGAAAACCGGCAAGGGAAAAGCCGCCAAAGACCCTAACAAGCCAAAGAGGCCACCGAGTGCTTTCTTCGTTTTCATGGAAGAATTTAGGAAACAGTTCAACAAGGATCATCCTGAAAACAAAGCAGTATCTGCTGTGGGCAAGGCTGCTGGAGCTAAATGGAAACAAATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCAGAGAAACGAAAGCAGGACTATGAGAAGAACATGAGAGCCTACAACAAAAAACAGGTGGGGTTGCAAATCTATGGTATCCTATCTAACACGTACCACGATAGTTTCTCATCATTTTGTGATTGTTTTCAGGCTGAAGGTCCTACTGGTGGAGATGAAGAGGAATCAGACAAATCAATATCCGAGGTCAATGATGAAGATGATGATGAGGAAGGAAGCGGCGAGGAAGACGATGACGAATGGGTCTCATCACTTGCTGATAAACATGTTTCGTTCTTCCAGAAAACGTATGATGTCCGGCAACAATTTTGTTAA 798 0.4511 MSPQVPHSRPKKNLVIRHNLSKPSLNGVQTNEHPLFLSLPFPLSRYLSQTLPSQPHFPPSAPVMKGAKSKAESKRGDAKLAVNKKGTPATKGGRKTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNKKQVGLQIYGILSNTYHDSFSSFCDCFQAEGPTGGDEEESDKSISEVNDEDDDEEGSGEEDDDEWVSSLADKHVSFFQKTYDVRQQFC 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00236 265 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 205 240 IPR031061 -
Adu08g00236 265 CDD HMGB-UBF_HMG-box 108 174 - -
Adu08g00236 265 SMART hmgende2 107 178 IPR009071 -
Adu08g00236 265 SUPERFAMILY HMG-box 95 187 IPR036910 -
Adu08g00236 265 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 108 177 IPR009071 -
Adu08g00236 265 Coils Coil 159 179 - -
Adu08g00236 265 MobiDBLite consensus disorder prediction 207 243 - -
Adu08g00236 265 Pfam HMG (high mobility group) box 108 177 IPR009071 -
Adu08g00236 265 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 64 181 - -
Adu08g00236 265 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 64 181 IPR031061 -
Adu08g00236 265 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 205 240 - -
Adu08g00236 265 MobiDBLite consensus disorder prediction 219 242 - -
Adu08g00236 265 MobiDBLite consensus disorder prediction 49 112 - -
Adu08g00236 265 Gene3D High mobility group box domain 92 183 IPR036910 -
Adu08g00236 265 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00236 Adu-Chr8 3982283 3985992 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Adu08g00236 HMG_box 5.2e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00236 K25507 - gmx:100500173 219.935