Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00224 ATGAGAGATGGTGGAGTGTTATCATCAGGTACCATGCTGGAACCTACTCCTCCTCCTCCTCCTCCTCCACTACCACCCCCACCAGCACCACCTCCAACAACAACAACATCAATATCAGTGGACTATGATTACATCAACGAACTCTTTGTAGATGGTTGCTGGTTAGCAGCTTCTTCTTCTGCTGCTGCTGCTGCTGATGGATCTGCTGATTTCTATGTGCCAAGTCCTTCTTTTTCAAACCCCATATTTGATCCATTCTCTTGGCCTTGCTTGGATACTGAACAAATTGAATCCCAAGCACGAGAACGAGAACAAGAACATGAAAAACAAGAACAACCACCACCTTTTAGCCATGACTTAGTTGTTGCTGCTAATAGTTGTAGCCGGAATCAGCAACAACAGTATCATCACTATGAGAATCAGTCAGTGGAAAACAATAATCCAAATCCTAATAATCCTTCTGAGTTTTTCAGAAGATGGTGGATTGCACCAAGTTCTAATCCGGGACCTGGATCTTATGTCGTTGAGAAGCTATTGAAGGCACTCATGTGTATCAAAGATGTGAACAGAAACAAAGACATGCTTATACAAATATGGATTCCAGTTATGAACAGAGGAGGCACTCAGATTCTCAGAACCAATGGGCTTCCATTCTCACTTGAATCAAGGTCTGTGAACCTTGCAAAGTACAGAGAAATCTCGGAGGTGTACCAGTTCTCTGCCGAGGAGGATTCGAAGGAGTTGGTGCCCGGATTGCCAGGGAGAGTTTACAAGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTCAGGAGCTATGAATATCCAAGAGTTGACCATGCTCAAGTCTATGATGTGAGAGGATCATTGGCACTTCCAATCTTTGAGCAAGGTAGCAAGAATTGCTTAGGTGTTGTTGAAGTTGTCATGACTCAACAGAAAATCAACTATCGCCCTGAACTTGAAAGTGTTTGCCAAGCACTTGAGGCTGTTAATCTTACAAGCTCAAAACTTCCAACTATTCAGAATGTGAAGCATACATCATGTGAAAAGTCCTATGAAACTGCATTGCCTGAGATTCAAGAAGTATTAAGATCTGCATGTGAAATTCACAAATTGCCATTGGCACAGACATGGATTCCATGCATCAAACAAGGCAAAGAAGGATGCCGACACTCAGAAGACAACTATCCACACTGCATATCTCCAGTGGAGCATGCTTGCTATGTTGGTGACCCTTCAATCCAGGTCTTTCATGAGGCATGCTCTGAGCATCACTTGTTAAAAGGCCAAGGTGTTGCCGGCGGAGCATTCATGACGAATCAGCCTTGCTTCGCACCCGACATAACTTTGTTAAGCAAGACAGACTATCCACTTTCTCATCATGCAAGGATGTTTGGATTGCGCGCTGCAGTCGCCATACGCTTGCGAAGCATCTATAATAGTTCAGATGACTTTGTTCTTGAGTTCTTCTTGCCTTTGGAATGCATTGACAATGATGAACAGAAGAAGATGCTCACTTCATTGTCATTGATCATACAAAGGGTTTGCCATAGCTTGAGGGTTATATCAGATAAGGAATTGGAGGAGGAAACTGATTTTTCAGTTGAAGAAGTGATAGCTCATGAAGATAGTGGCACTTTTGCTAGTGCTGCAGCGTGGCCAGAACCACTGCAGAGTCAAATTGTTGCTTCATTGGGTGCTCAAGAAAAATCAAGTGAAACTATGGGGACGAGTTTCTCCGACCAAAGACAACAACAGCAAGAGAGTTCTGTTTTGAAAGGGAACCTTGACTCTAATGGGGAGTGTTCTACTTATAATGTCGGGAACTTGTCAAGTAAAACCGGAGACAAGAAGAAGAGCAAAGTAGATAAGACTATCACTCTGCAAGTTCTTCGCCAACACTTCGCTGGAAGCCTAAAAGATGCAGCAAAGAACATTGGTGTTTGTACTACAACGTTAAAAAGGATCTGCCGGCAACATGGGATAAAACGTTGGCCTTCAAGGAAGATCAAGAAGGTTGGTCATTCCTTGCAGAAGCTTCAACTTGTAATCGACTCAGTCCAAGGAACAAGCCTGTTCTCAAATCTCAAGCAATGTGATAATAATCCAAACTCACTAAGCATACAGCCGGATCCTGGTTCGCTGAGTCCGGAAGGCGCATCAAAATCGCCGTCCTCTTCTTGCAGCCAGAGCTCGATTTCTAGCCATCCATGTTCCAGCATGGCTGAGCAACAGAATCATCATCTCACAAATAATAATTTTGATAGTAGCAAAGATCAAATGGTGTTATTGGTTGGAGAGAATTCTAGCGGCGATGGCTTGTTGAAGAGGATAAGAAGTGAAGCAGAATTGAAAAGCTTGAATGAAGATAGAGTAAAAATAGTCATGCCAAGATCGCAAAGTCAAGAAACACTTGGTCAACATAACGTTCAAAATGGGCACCATGGATCATTGTCAAGAACCAAAAGCAAAGGGACTCAAAAGGAGGATGCAGCTTATAGAGTGAAAGTAACATATGGGGATGAGAAAGCAAGGTTCAAGATGCCTAAGAATTGGGGCTATGAAGATCTTGTGCAAGAAGTTGGTAGGAGATTCTGCATAAGTGACATGAGCAAATTTGATGTCAAATATTTGGATGATGATTATGAATGGGTGCTACTAACCTGTGATGATGATTTAGAAGAATGCATTGAAGTTTGTCAATCATCTGAGAGCACCACCATCAAGCTTTGTCTTCAACTCTCTAATACTAATCATAGTATGCGAAACCCTTTAGAATTTAGATAG 2793 0.4253 MRDGGVLSSGTMLEPTPPPPPPPLPPPPAPPPTTTTSISVDYDYINELFVDGCWLAASSSAAAAADGSADFYVPSPSFSNPIFDPFSWPCLDTEQIESQAREREQEHEKQEQPPPFSHDLVVAANSCSRNQQQQYHHYENQSVENNNPNPNNPSEFFRRWWIAPSSNPGPGSYVVEKLLKALMCIKDVNRNKDMLIQIWIPVMNRGGTQILRTNGLPFSLESRSVNLAKYREISEVYQFSAEEDSKELVPGLPGRVYKEKVPEWTPDVRFFRSYEYPRVDHAQVYDVRGSLALPIFEQGSKNCLGVVEVVMTQQKINYRPELESVCQALEAVNLTSSKLPTIQNVKHTSCEKSYETALPEIQEVLRSACEIHKLPLAQTWIPCIKQGKEGCRHSEDNYPHCISPVEHACYVGDPSIQVFHEACSEHHLLKGQGVAGGAFMTNQPCFAPDITLLSKTDYPLSHHARMFGLRAAVAIRLRSIYNSSDDFVLEFFLPLECIDNDEQKKMLTSLSLIIQRVCHSLRVISDKELEEETDFSVEEVIAHEDSGTFASAAAWPEPLQSQIVASLGAQEKSSETMGTSFSDQRQQQQESSVLKGNLDSNGECSTYNVGNLSSKTGDKKKSKVDKTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGTSLFSNLKQCDNNPNSLSIQPDPGSLSPEGASKSPSSSCSQSSISSHPCSSMAEQQNHHLTNNNFDSSKDQMVLLVGENSSGDGLLKRIRSEAELKSLNEDRVKIVMPRSQSQETLGQHNVQNGHHGSLSRTKSKGTQKEDAAYRVKVTYGDEKARFKMPKNWGYEDLVQEVGRRFCISDMSKFDVKYLDDDYEWVLLTCDDDLEECIEVCQSSESTTIKLCLQLSNTNHSMRNPLEFR 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00224 930 SUPERFAMILY CAD & PB1 domains 828 917 - -
Adu08g00224 930 MobiDBLite consensus disorder prediction 703 746 - -
Adu08g00224 930 PANTHER PROTEIN NLP4 40 920 - -
Adu08g00224 930 CDD PB1_NLP 836 915 IPR034891 -
Adu08g00224 930 Pfam RWP-RK domain 627 675 IPR003035 -
Adu08g00224 930 MobiDBLite consensus disorder prediction 574 599 - -
Adu08g00224 930 MobiDBLite consensus disorder prediction 1 37 - -
Adu08g00224 930 MobiDBLite consensus disorder prediction 97 114 - -
Adu08g00224 930 Gene3D - 831 914 - -
Adu08g00224 930 ProSiteProfiles RWP-RK domain profile. 614 695 IPR003035 -
Adu08g00224 930 Pfam PB1 domain 835 915 IPR000270 GO:0005515
Adu08g00224 930 MobiDBLite consensus disorder prediction 97 117 - -
Adu08g00224 930 SMART PB1_new 834 917 IPR000270 GO:0005515
Adu08g00224 930 ProSiteProfiles PB1 domain profile. 834 917 IPR000270 GO:0005515
Adu08g00224 930 MobiDBLite consensus disorder prediction 801 831 - -
Adu08g00224 930 PANTHER PROTEIN NLP8 40 920 IPR045012 GO:0003700
Adu08g00224 930 MobiDBLite consensus disorder prediction 801 822 - -
Adu08g00224 930 MobiDBLite consensus disorder prediction 13 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00224 Adu-Chr8 3771088 3774522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00224 37 918 NLP Transcription Factor Family AT1G20640 45.354 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Adu08g00224 PB1 9.8e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00224 - - ahf:112705709 1724.52