Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00195 ATGTCCTCTTCCACCGTTGGCAATGAGGAGGAGAAGCTTTACCCTTCCCCACTAGCCTCTCACGACGACATCGTCAAGGACCCTTCTGTCTTTTGGGATACTCTCAGACGCTTTCACCTCCTTCTCAGTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGATTTGCACGTCCTGTACGTGGAGGTTACGAGGAGAAGTGGCTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGGGAACTGTCTTCAGGTTCTCAGCGACGACCACAAGCGCCTCTTTTGTGCTCAGGAAACACTACCGCAACCTTCTTTACCATTACGAACAAGTTCACTTCTTTAATGTTAAGGGTCCTCTATACTCTCCATCATCAGATTCATTTTCTGGCAGCAAGCACTCCTGGAGATCTGAGCTGGCTATTGTTGAATATTCTCCCAAGCCAGTGACCCATACTAAAGGTTCCAAACCTCAAGAGTCTATAGACCCTTCATCAAATCTTTCAGGGAGGGGAACGATAGAGGGAAAATTTGAATGCGGCTATTTAGTGTCAGTGAAAGTGGGTTCAGAGGTTCTAAGAGGAGTGCTGTACCATCCAGAGGAATTGGTTCCTCCCCCAACTGTTCCACAAAATGGCAATGCCATCGTACCCTACGGCTGCAAACCTCACCATTCCGGCCGCCGGAGGAGGAGGAACAAGAGAAAGTGGGACCCGAACTACCCGAAGCCAAATCGGAGTGGTTATAACTTCTTCTTTGCTGAGAGGCATTACAAGCTCAAGTCACTTTATCCAAACAGAGAGAGGGAGTTTACCAAAATGATTGGCCAGTCTTGGAATAGTCTCAGCCCAGAAGAAAGAATGGTTTACCAGAACATTGGCTTAAGAGACAAAGAAAGGTACAAGAGGGAGTTGAAGGAGTACAAGGAAAAGATGAAGATTATGCAAAATTTAGAAGTTGCGGCGCCCAGAAATCTCACTGGTTCTGTCCTTAATGGTAGCCAAAGAATGGCTTAG 1023 0.4673 MSSSTVGNEEEKLYPSPLASHDDIVKDPSVFWDTLRRFHLLLSTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGTVFRFSATTTSASFVLRKHYRNLLYHYEQVHFFNVKGPLYSPSSDSFSGSKHSWRSELAIVEYSPKPVTHTKGSKPQESIDPSSNLSGRGTIEGKFECGYLVSVKVGSEVLRGVLYHPEELVPPPTVPQNGNAIVPYGCKPHHSGRRRRRNKRKWDPNYPKPNRSGYNFFFAERHYKLKSLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELKEYKEKMKIMQNLEVAAPRNLTGSVLNGSQRMA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00195 340 CDD ARID_HMGB9-like 27 112 IPR045303 GO:0003677
Adu08g00195 340 Pfam HMG (high mobility group) box 244 311 IPR009071 -
Adu08g00195 340 SMART bright_3 26 117 IPR001606 GO:0003677
Adu08g00195 340 Pfam ARID/BRIGHT DNA binding domain 31 112 IPR001606 GO:0003677
Adu08g00195 340 SUPERFAMILY ARID-like 21 119 IPR036431 GO:0003677
Adu08g00195 340 Gene3D High mobility group box domain 228 327 IPR036910 -
Adu08g00195 340 SMART ARID_2 22 112 - -
Adu08g00195 340 SMART hmgende2 243 312 IPR009071 -
Adu08g00195 340 MobiDBLite consensus disorder prediction 154 172 - -
Adu08g00195 340 CDD HMGB-UBF_HMG-box 244 308 - -
Adu08g00195 340 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 321 - -
Adu08g00195 340 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 321 - -
Adu08g00195 340 MobiDBLite consensus disorder prediction 220 244 - -
Adu08g00195 340 ProSiteProfiles ARID domain profile. 25 116 IPR001606 GO:0003677
Adu08g00195 340 MobiDBLite consensus disorder prediction 149 172 - -
Adu08g00195 340 SUPERFAMILY HMG-box 241 314 IPR036910 -
Adu08g00195 340 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 244 311 IPR009071 -
Adu08g00195 340 MobiDBLite consensus disorder prediction 225 239 - -
Adu08g00195 340 Gene3D - 18 122 IPR036431 GO:0003677
Adu08g00195 340 Coils Coil 300 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00195 Adu-Chr8 3162313 3164472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00195 12 316 ARID Transcription Factor Family AT1G76110 65.049 1.54e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Adu08g00195 ARID 6.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00195 - - adu:107460270 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00195 08 3162313 3164472 Adu08g00195 08 3162313 3164472 ECH