Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00175 ATGGTTACCACCGCGGCTGATTCTTCCTCTAACCACCACTCTCCCATTGTTGCTGCCGCCACAACCACAAATGTTCCCACCAGTAACCTTAATTTCCCGCGAAAAAGCCTACCTTCTCCTTGGGCTCAAGTCGTTCGCGGCCCCGACGTTGAGCCACCCTCCGCCGCCGTCCACCAATTGCTGTCGCCATCGTCTTGCTCGTCCTCCTCTGCAACCGACCAACTGCTGCAATCCTCCGATCCCTCGCCGCCGTTTGAAAGTTCTAATTCCGATGGCGCCACCGCGGCTGCAGCAAGTGTAGATAGCTTGGATGCTGATAAGGCGGGCAATAATGCGGGTGGACCTAAGAAACCCGCGTGGAGGAGGCAATCAAACGGCGTAGAAGATGCTTGTGCTGTGAAGGTAATGGACGCTGTTTCTTGGCCCGCTTTGTCAGATTCCACCAAGCCTACCACTAAGTTGTCACCTGAGGCCTCATCTTCCAAGACTGCTTTTGATGGATCGCAACCTACTCCTCGGGGTCCGGTTGCTTCACACTCTCCTCGAAAGCAAGGAGTTGGCAATGCAAGACTTAATCCAACATCAGTTTATGGTGGGGCTGGTAGACAAAGACTAATAAAGTGTGGAGGCGGCAATGTCAATGGCAATGGCAATGGCAATGGTGCTGGCCCTGTTCAAGCAATGAGGAGCTTCTCTGCTCCTCCTCCTCCCCCACCACCACCCCCTTTTCCTGTAATTCAGATGCCTCCAACTAGCTTTCCTAATGGGGTAGCAGGGGTGGCAGCCCTTGTTCCAAGAGATCCTTACAGGAATAGTAGCTGGGGTGCAAGGTCTCCGGTTGGGAGTTTCGTGCCACCAATGATTGAACATAGGAGTCCATCTCGCAGGGGAACTTTTGGGCATCATCCACGTACTGGTGGTTCTTTTCATAATTATGGCATCCGGAGTGATCAGGATCGCCAAAATTATGCACATACCAGAGATCCTCAGTTACACCCGCCAAGGATGTTTCCAACACGAGCAATGGGCCCGCTTCCACCTAATACCCCTTCATTTGCAGGTCCTCAGCCTATACCACCGTTTGTAAACCATGCTGGCTTTCCTGAATATTGTTATTTTCCAACGTTACAATTTGAACCATTTGGGGGTATGCCATTCTTTACCCATGGACCTCCTTCTGCAATGTTCTATCCTGTTGCAGAAACTTCTCTTGTCAATGCAATAGTCAAGCAAATTGATTATTATTTTAGTGATACTAATTTAGTGAAAGATGAGTTTCTACGTTCTAACATGGATGATCAGGGCTTTGTTCCAATTAGATTGGTTGCAAGCTTTCGTCGTGTTAAAAGTTTGACAAGCAATGTTGAGTTGATTATAGATTCATTGAGAATATCTACTATCATAGAAGTGAAGGGTGATAAGTTGAGAAGGCGGAAGGATTGGATGAAGTGGCTGCCCACTCCTTTGAATCGGGCAGATTTTGGTTCAACATCTATGGGTGGATCAAGTTATAATAACTCAGCAACTGATTTTGAAAAGATCACTTTGGATAAGACCACTGTGGATAGACTTAATTCCAATTCTATCACAACGAGTGATGGCAATGTGAATGAAGAGTCCTCTAGTTCGTATCAATTCCATAATCATGATGCTATGCTTAGCAGCAATTAA 1671 0.4752 MVTTAADSSSNHHSPIVAAATTTNVPTSNLNFPRKSLPSPWAQVVRGPDVEPPSAAVHQLLSPSSCSSSSATDQLLQSSDPSPPFESSNSDGATAAAASVDSLDADKAGNNAGGPKKPAWRRQSNGVEDACAVKVMDAVSWPALSDSTKPTTKLSPEASSSKTAFDGSQPTPRGPVASHSPRKQGVGNARLNPTSVYGGAGRQRLIKCGGGNVNGNGNGNGAGPVQAMRSFSAPPPPPPPPPFPVIQMPPTSFPNGVAGVAALVPRDPYRNSSWGARSPVGSFVPPMIEHRSPSRRGTFGHHPRTGGSFHNYGIRSDQDRQNYAHTRDPQLHPPRMFPTRAMGPLPPNTPSFAGPQPIPPFVNHAGFPEYCYFPTLQFEPFGGMPFFTHGPPSAMFYPVAETSLVNAIVKQIDYYFSDTNLVKDEFLRSNMDDQGFVPIRLVASFRRVKSLTSNVELIIDSLRISTIIEVKGDKLRRRKDWMKWLPTPLNRADFGSTSMGGSSYNNSATDFEKITLDKTTVDRLNSNSITTSDGNVNEESSSSYQFHNHDAMLSSN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00175 556 ProSiteProfiles La-type HTH domain profile. 398 487 IPR006630 -
Adu08g00175 556 MobiDBLite consensus disorder prediction 1 126 - -
Adu08g00175 556 PANTHER LUPUS LA PROTEIN-RELATED 53 544 IPR045180 -
Adu08g00175 556 SUPERFAMILY "Winged helix" DNA-binding domain 395 486 IPR036390 -
Adu08g00175 556 SMART la 402 480 IPR006630 -
Adu08g00175 556 Gene3D - 396 485 IPR036388 -
Adu08g00175 556 MobiDBLite consensus disorder prediction 144 168 - -
Adu08g00175 556 MobiDBLite consensus disorder prediction 217 237 - -
Adu08g00175 556 MobiDBLite consensus disorder prediction 293 315 - -
Adu08g00175 556 MobiDBLite consensus disorder prediction 1 36 - -
Adu08g00175 556 MobiDBLite consensus disorder prediction 58 96 - -
Adu08g00175 556 PRINTS Lupus La protein signature 411 428 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Adu08g00175 556 PRINTS Lupus La protein signature 466 479 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Adu08g00175 556 PANTHER LA-RELATED PROTEIN 1B 53 544 - -
Adu08g00175 556 MobiDBLite consensus disorder prediction 526 556 - -
Adu08g00175 556 CDD LAM 406 479 - -
Adu08g00175 556 MobiDBLite consensus disorder prediction 142 198 - -
Adu08g00175 556 Pfam La domain 408 463 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00175 Adu-Chr8 2722733 2725283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00175 K18757 - gmx:100775279 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00175 08 2722733 2725283 Adu08g00175 08 2722733 2725283 ECH
Adu06g01298 06 17688864 17693060 Adu08g00175 08 2722733 2725283 PCT