Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00078 ATGTGCTTCCTTGCACTGAGTACCCACCACTTTCTTTCAGTTGAGCAGTTCTCGAAATCTATAGAAATGTATCCCAACCAAGCATTCTCTTCAGGATCCTATGCTGAGATGTTGTCTGGGAATCCTTTATTGTCTCATAACTACAACAATAATGGATCCGTTGGAGCACCAAACATGGTTGATCCAGCATGTAATTCTTTTGTAGGAGGTGAACAAAATGTACATGGCCAAGGGTTATCTCTTAGTCTAGGTACATCTGTTTCTTCCTTTCAATACCAGTATGATGGAACTACTGCTGCTGCTGAATGCATGGTATCTTTATCTTCTGGAGGCTTTCATGAAAGTGCCAAAAGAGAGGGTTTGTACAATTCCAATAACTCTGATCCATGCATTCAAGGATCATTCTCAAACGGTGTATTGAACTCACACTATCTTAAGGCAGCACAGGAGTTACTTGATGAAATAGTTGGTGTCCGAAAGGCTTTGTTGAAGCAACCTGGAATGGAGAAACAAGAAAAGTTCAATAATGGCATTGATGGTGGCTCCAAGGATTCTGATGGAAAATGTAACAGTCAATCTCTGCAAAATAATGTCAAACCTCCTAATGAATTATCAGCCGAAGAACGCCAGAGTTTATTAGAAAAGAAGACAAAGCTTCTGACCTTGTTGGATGAGGTGGATAAGAAATACAGACAGTACTGTCATCAGATGCAGATTGTGAGGTGCCTTGGGGAACAAGAAGGGATTCCACGTCTTCGTTATGTTGATCAACAGCTTAGACAGCAAAAGGCACTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGTCTCCCCGAAACCTCTGTCTCAATACTTCGCGCTTGGCTTTTCGAGCATTTTCTTCACCCGTATCCCAAGGATTCAGAGAAAATCATGCTGGCAAGACAGACAGGCCTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCACGGGTGCGGCTATGGAAGCCGATGGTTGAAGAAATGTATAAAGAAGAGTTTGGTGATTCTGATAACATAAGCTGCAATATTCCATCCGAAGGCATTGTGAAACGTAAAAGAGATGATGCTGAAGCCTCTGATAACAAAGGGGAAGATGATTCACAAGACAATTTAGTAACCATTGCTGATAGTGTCCAACAAGAAGGGCATTTTCATAAACATACATCATGTTCCGTGGATGAGAACAACAATAATGGGGTTTATAGTTGTGGAAGCATAATGGGTTGTAGCACTAGTCCTGCTGCATATGATTTTGCAGAGTTGGGTAACTTTACATCTACCATGGGTGGCCACGTGTCTCTTGCATTGGAATTGAGGAACTGTGAAAGGGATGGGTTTGGTGGCATGTCTGATAATGATGGCATCCACAAGAAAAGACGTAATCATTGTGTAGATATATTTCTCACTTTGTAA 1449 0.4196 MCFLALSTHHFLSVEQFSKSIEMYPNQAFSSGSYAEMLSGNPLLSHNYNNNGSVGAPNMVDPACNSFVGGEQNVHGQGLSLSLGTSVSSFQYQYDGTTAAAECMVSLSSGGFHESAKREGLYNSNNSDPCIQGSFSNGVLNSHYLKAAQELLDEIVGVRKALLKQPGMEKQEKFNNGIDGGSKDSDGKCNSQSLQNNVKPPNELSAEERQSLLEKKTKLLTLLDEVDKKYRQYCHQMQIVRCLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSDNISCNIPSEGIVKRKRDDAEASDNKGEDDSQDNLVTIADSVQQEGHFHKHTSCSVDENNNNGVYSCGSIMGCSTSPAAYDFAELGNFTSTMGGHVSLALELRNCERDGFGGMSDNDGIHKKRRNHCVDIFLTL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00078 482 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 241 465 - -
Adu08g00078 482 MobiDBLite consensus disorder prediction 362 381 - -
Adu08g00078 482 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 241 465 - -
Adu08g00078 482 SMART HOX_1 275 339 IPR001356 GO:0003677
Adu08g00078 482 CDD homeodomain 275 336 IPR001356 GO:0003677
Adu08g00078 482 Pfam Associated with HOX 139 240 IPR006563 -
Adu08g00078 482 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 53 241 - -
Adu08g00078 482 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Adu08g00078 482 Gene3D - 272 350 - -
Adu08g00078 482 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
Adu08g00078 482 SMART prehox3 133 271 IPR006563 -
Adu08g00078 482 MobiDBLite consensus disorder prediction 171 205 - -
Adu08g00078 482 SUPERFAMILY Homeodomain-like 276 343 IPR009057 -
Adu08g00078 482 MobiDBLite consensus disorder prediction 185 204 - -
Adu08g00078 482 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00078 Adu-Chr8 1140135 1143737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00078 76 351 Homeobox Transcription Factor Family AT1G19700 47.091 6.01e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Adu08g00078 POX 8.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00078 - - aip:107610078 854.358