Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00028 ATGACGACGGAGCCACCACCAATGCCACTTTCCGGCGAGGAAGCCGCCACCTTATCGGCTTTGGACTTAGAAACAGCACCTCAACCACCCGCACCTCCCCTAAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCGGATGCTGAGGTGATTGCTTTGTCGCCAAAGACGCTGTTAGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGAGGGACCAGAATCTCCAGCTCCACCGGCGGGGACACAACCTCCCGTGGAAGCTCCGGCAGCGTGCCACCAAGGAGGTACGAAAGAGGGTGTACGTGTGCCCCGAACCTTCGTGTGTCCACCACAATCCTTCCAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGCTCAAATGCGAACGTTGCTCAAAGAAATACGCCGTTCAGTCCGATTGGAAGGCACACATGAAGACCTGCGGAACCAGAGAGTACAGATGCGGTTGCGGAACCTTGTTCTCTAGGAGGGATAGCTTTGTTACGCATAGAGCTTTTTGCGATGCGTTAGCTGAAGAGAGTGCTAAGGCTCAAACCCTAAGCACTGATGACAAGGACGGTGTTGGTGCTGGTGTGACTGCGGCTTCTTCTTCATCGCCGCCGCAGCCGCCGCTTACTCCGTCGACTTCGGTGGTGTCTCCGACTCTGTCAATTCAGAGCTCAGAAATTCCGGAAAATGCGACGAGGCTGTCACCGCCAACAACGTGTGTTGCGAAAGCTGTGACAACTAGCACTGTTCTTGCAACTGTGTTGGCATCCTCAGCCGGAGCAGCAGCACCATCAACCACCTCATTCCCCAACGTCACGGCAGCCACGTCACTCTCCCTCTCCGTGCCACTCTATCTCTCCAACAACGTTAACGACCCTCGCCATCACTACACTGCATGTCCACAGCCATCAACAACAGCTGCACTGTCTGCCACCGCATTGCTCCAGAAGGCAGCTCAAATGGGTGCAGCTTCTTCCAACACGTCGCTTCTTCGAGGTTTAGGCTTAGCCACGTCATCTACGGGATATCATCCTCAAGACGAGAGCGGCATTGACAACCCAATAATGCAATGGAACATGAGCAGCCATGTGAAGCAAGAGAATCCGAGTTTGGCAGATCATAACCTTGGGCTTGGACTTCCATGTGGGGATCCGGGTTTTGCAGATGTGATGATGGGGTCCCCTCCCATGACCCGGGATCTTCTTGGTCTTGGAATCGGTGGCAATGGCGGTGATAATGTTAGCAGGGGTGGTCTTTCTGCTTTATTAACCTCTTTTGGAGGGAACTTCGATTCATCTGGAGATGCAGGTGGAGTTCGCCACCAGTAG 1380 0.5435 MTTEPPPMPLSGEEAATLSALDLETAPQPPAPPLKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRATKEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKLKCERCSKKYAVQSDWKAHMKTCGTREYRCGCGTLFSRRDSFVTHRAFCDALAEESAKAQTLSTDDKDGVGAGVTAASSSSPPQPPLTPSTSVVSPTLSIQSSEIPENATRLSPPTTCVAKAVTTSTVLATVLASSAGAAAPSTTSFPNVTAATSLSLSVPLYLSNNVNDPRHHYTACPQPSTTAALSATALLQKAAQMGAASSNTSLLRGLGLATSSTGYHPQDESGIDNPIMQWNMSSHVKQENPSLADHNLGLGLPCGDPGFADVMMGSPPMTRDLLGLGIGGNGGDNVSRGGLSALLTSFGGNFDSSGDAGGVRHQ 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00028 459 Gene3D Classic Zinc Finger 44 110 - -
Adu08g00028 459 MobiDBLite consensus disorder prediction 1 46 - -
Adu08g00028 459 Gene3D Classic Zinc Finger 117 199 - -
Adu08g00028 459 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 22 451 - -
Adu08g00028 459 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Adu08g00028 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 451 - -
Adu08g00028 459 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Adu08g00028 459 SMART c2h2final6 64 86 IPR013087 -
Adu08g00028 459 SMART c2h2final6 105 135 IPR013087 -
Adu08g00028 459 SMART c2h2final6 140 160 IPR013087 -
Adu08g00028 459 Pfam Zinc-finger of C2H2 type 64 86 - -
Adu08g00028 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Adu08g00028 459 MobiDBLite consensus disorder prediction 199 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00028 Adu-Chr8 321571 325335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00028 35 442 IDZ Gene Family AT5G66730 50.743 2.01e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu08g00028 zf-met 0.0032 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00028 K25869 - gmx:100818095 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00028 08 321571 325335 Adu08g00028 08 321571 325335 ECH