Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g02029 ATGTTCTCATCAACCCTCTTTCCGGAGTTGTATGACCATGATTTCTTGGATGAGTTAATGTCACTAAGAAGAGAAACATGGGAAAGCACAAATAATAATCCATGTGATGAAGAAGGAAACTACCAATTACTCTTCCCAAATAATAATGGGTGGGGTAATAGTGGCGGTTTTGATCATCAAAATTATTACTCATCACCTTCTTCTATTCTTGTTCCAAACTCCTCTTATTCTTGTTCTTCTTCTTCTTACCAAGAAGTTCCTCAAAATTGCAACGATTATTATTGTGACACTACCTTCAATGAAATATATAGTTCCTTGCTTGAAGAATTCTCAGCACCACAGATCAATAATAGTGACACTACTACTCCACCACCAATATTAATGAGTGATCATCAAGAGGATTATAATAATAGTAATAATAATAATGAAAATCCACTATTAGTTTCTATGTTGGTGGAAGAAGAGCTTCAAAGCTTGGAGATGCAAAGAGAGTGCAAAATGGAGGCAAGTCAATCATCTTCTCCTCCTGTTTTCAACTCGGAAAGGAAGAACAATAATAGATCAAAGAAGGTTGAGGGCCAACCCTCCAAGAATCTAATGGCTGAGAGGAGAAGAAGGAAGAGATTGAATGATAGGCTCTCCATGCTTAGATCAATTGTCCCCAAGATTAGCAAGATGGACAGAACATCTATACTTGGAGACACCATTGACTACATGAAGGAACTACTAGACAAGATCAATACTTTGAAACAAGAAATCCAAGTGGTGGATGATTCAAATGGCATTTTATCCAATGATAAACACCCAAATGATATTTTAGTGAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGGAATAATAATGGAGACACAAGAGTTGAGATCTGTTGTGGTGGGAAGCCAGGGATGTTGCTATCTACAGTAAACACTTTGGAAGCATTGGGTCTTGACATTCAACACTGTGTTATAAGCTGTTTCAATGACTTCACAATGCAAGCTTCTTGCTCAGAGGTATATATATAA 1023 0.3715 MFSSTLFPELYDHDFLDELMSLRRETWESTNNNPCDEEGNYQLLFPNNNGWGNSGGFDHQNYYSSPSSILVPNSSYSCSSSSYQEVPQNCNDYYCDTTFNEIYSSLLEEFSAPQINNSDTTTPPPILMSDHQEDYNNSNNNNENPLLVSMLVEEELQSLEMQRECKMEASQSSSPPVFNSERKNNNRSKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLDKINTLKQEIQVVDDSNGILSNDKHPNDILVRNSPKFDVERRNNNGDTRVEICCGGKPGMLLSTVNTLEALGLDIQHCVISCFNDFTMQASCSEVYI 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g02029 340 PANTHER DNA BINDING PROTEIN 10 338 - -
Adu07g02029 340 Gene3D - 181 260 IPR036638 GO:0046983
Adu07g02029 340 Pfam Helix-loop-helix DNA-binding domain 199 242 IPR011598 GO:0046983
Adu07g02029 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 255 IPR036638 GO:0046983
Adu07g02029 340 Coils Coil 239 259 - -
Adu07g02029 340 CDD ACT_UUR-ACR-like 291 332 - -
Adu07g02029 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 338 - -
Adu07g02029 340 SMART finulus 199 248 IPR011598 GO:0046983
Adu07g02029 340 MobiDBLite consensus disorder prediction 183 208 - -
Adu07g02029 340 MobiDBLite consensus disorder prediction 164 182 - -
Adu07g02029 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Adu07g02029 340 MobiDBLite consensus disorder prediction 161 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g02029 Adu-Chr7 65831287 65833024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g02029 122 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 54.587 2.09e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu07g02029 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g02029 - - gmx:100814388 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu07g02029 07 65831287 65833024 Adu07g02029 07 65831287 65833024 ECH