LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu07g02005	ATGGATTCTCTTCTCTCACTCCAAACCCCAAGCAACAACCCACACCCTCATTCACCGCCAGGCCTCACCCCAACGCCGTTACGGTTACAACCAACACAAATGCCGTTACTAGTTCCAAAACCAGAGCCTCTCGACGATTTCTTCTTTTCTAATAATTCCCAACAACGCCCTCACTGGTTCCCTCACCAACAACAACTACAACCACCCCAACCTAACAACAACGAGTTTGAGTTACACGCGCCACCGTTCGCGTCTTCTTCTCCAGAAGAACAAGAAGACTCCGAACTCTACAACCACTTCTTCCGAGTCTCTCAGCTCTTCCGTACAGCTTTCTCTGATACTCTCTTCCAAAAGGACGCCGTTCCGGAACCCGTGACGCCACAATTACAGTCACAGTCGCACTCGAATTTTCAAGATTCTCTTTCCTATGCTTCTAGTTCCCAACCTGAACCTGAGGCTGAGGTTGAGGCAACGCCCGAAGCGGATTCACGCGCCTTGGTTCCCGTTCCGCCATCTTCGTCGTTGGTCGTCGCGGCTCCTTCGAAGCGCGTGAGCAAGAAGAAGTTGCTGGTGAGGGTCTCCAAACTCCGCCTTCACGAGCAGCTTCATTTCCGTGAGGTCGTGAGGCGAACGAGAATGATCTACGACTCGATCCGCGTTCTCTGCACCATCGAGGAAGAGAAGCGCGTCCAGGAGGAGAAAAGAGCTGCCGAGGAGAAGAGAGCTGCCGCCGTCGCTGACGTTGTTACTATTGCCGCTGATGAACCGTTCGCTGCATCTGAATCCACCATTGAATGTTCTTCCTCAGCTGAAACCACCGTCTCTGTTGCCGTGCCAGCTCCTGAATCCGCCGGGGAACAACAATCGGCGACCGACAATGGCGCCGGCAATAAACAGCCGAAAACAGTCAACAGGGGCGAAGCTGATGCCAAGATGGCGCGGCGGATGCGGCAAAGAGGGGATATTCGTGCGGCGAAGATGATGAGGTTGAAGCATCTTTGGCTGAACTGCGATAAGCGAATCGTCGGAGCGATTCCCGGTGTGTATGTTGGCGACGTGTTCCTCTTTCGGATGGAATTGTGTGTCCTTGGATTGCACGGTCAGATCCAGGCTGGCATTGATTACCTGGCAGCTTCCATGAGCCCCAACAATGAACCAATTGCAACGAGTGTCATTGTCTCCGGTGGCTACGAGGATGATATGGACGAAGGAGATGTTATAATCTACACTGGACAAGGCGGGCAGGCCACGAATTCCGTGAGGCAAGCCACACACCAGAAGTTGGAGAGTGGGAACCTGGCATTGGAGAGGAGTATGTATCATAATATTGAGGTTAGAGTGATTAGAGGGATGAAGTATGAGGGAGCCGCTGCAAAATCCGGTAAGATTTATGTCTATGATGGTTTATATAGGATTTCTGAGTGCTGGTTTGATGTTGGAAAGTCCGGTTTTGGTGTTTATAAGTATAAGCTTGTTAGGATTGAATGGCAGCCTAAGATGGGTAGTGCTATTCTTAAGGAAGCTAGGAGCATTAGGAAAAGTGGAGTGGATTTTCAACCAATGTATTGTCTTTCTGTTGATATTTCGAATAAGAAGGAGAAGGTTGCGGTTCGGCTCTTTAATGATATTGATGATAGTAAGGAGCCGCTTTGTTTTGATTATCTTCTGACAACTATTTTCCCTCCATTTGTGTTTCATCAGAGCGGGACAGCTACTGGCTGTGATTGTATTGGCGGTTGTATGGATGGATGCTTTTGCAGTATGAAGAATGGAGGCGAGTTTCCTTATAATCAGCAGGCGATCCTTGTGAGGGGGAAGCCTTTGATTTTTGAGTGTGGCCCTTTTTGCAGTTGTCCACCTCAATGTAGGAACCGTGTGTCGCAGAATGGGGTGAAGAACAAGTTGGAAGTTTTTAGGTCGAAGCAGACAGGTTGGGGAGTAAGGTCCTTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAGTATTCAGGTGTTGTTTTGACTAGGGAGCAAGCACAGCTTTTGACGATGAATGGTGACTCGTTGATATATCCTAATCGGTTTTCTGAAAGGTGGGCAGAATGGGGTGATTTGTCTCAGGTAAACTTGGACTATGTGCGTCCATCTTATCCGTCAATTCCTCCTCTGGATTTTTCTCTGGATGTGTCAACAGTCCGAAACGTTGCTTGCTATATGAGCCATAGTTCAAGTCCAAATGTTATGGTTCAATTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACATTATGCTGTTTGCAATGGAGAATATCCCTCCACTGAGAGAGCTCAGCCTTGATTATGGGGTGGCTAATGAGTGGACAGGCAAGCTCTCTATATGCATTGTTTCACTGAGACTTAGCTTGATTTTCAGAAGGGTTCAACGTACTCAGATTTTGTGGAACCATTGGAGTGCCTGCTTATGA	2448	0.4824	MDSLLSLQTPSNNPHPHSPPGLTPTPLRLQPTQMPLLVPKPEPLDDFFFSNNSQQRPHWFPHQQQLQPPQPNNNEFELHAPPFASSSPEEQEDSELYNHFFRVSQLFRTAFSDTLFQKDAVPEPVTPQLQSQSHSNFQDSLSYASSSQPEPEAEVEATPEADSRALVPVPPSSSLVVAAPSKRVSKKKLLVRVSKLRLHEQLHFREVVRRTRMIYDSIRVLCTIEEEKRVQEEKRAAEEKRAAAVADVVTIAADEPFAASESTIECSSSAETTVSVAVPAPESAGEQQSATDNGAGNKQPKTVNRGEADAKMARRMRQRGDIRAAKMMRLKHLWLNCDKRIVGAIPGVYVGDVFLFRMELCVLGLHGQIQAGIDYLAASMSPNNEPIATSVIVSGGYEDDMDEGDVIIYTGQGGQATNSVRQATHQKLESGNLALERSMYHNIEVRVIRGMKYEGAAAKSGKIYVYDGLYRISECWFDVGKSGFGVYKYKLVRIEWQPKMGSAILKEARSIRKSGVDFQPMYCLSVDISNKKEKVAVRLFNDIDDSKEPLCFDYLLTTIFPPFVFHQSGTATGCDCIGGCMDGCFCSMKNGGEFPYNQQAILVRGKPLIFECGPFCSCPPQCRNRVSQNGVKNKLEVFRSKQTGWGVRSLDLIHAGAFICEYSGVVLTREQAQLLTMNGDSLIYPNRFSERWAEWGDLSQVNLDYVRPSYPSIPPLDFSLDVSTVRNVACYMSHSSSPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLRELSLDYGVANEWTGKLSICIVSLRLSLIFRRVQRTQILWNHWSACL	815

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu07g02005	815	SMART	G9a_1	338	497	IPR003105	-
	Adu07g02005	815	Pfam	SET domain	644	776	IPR001214	GO:0005515
	Adu07g02005	815	SUPERFAMILY	PUA domain-like	325	507	IPR015947	-
	Adu07g02005	815	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED	310	786	-	-
	Adu07g02005	815	Gene3D	SET domain	502	789	IPR046341	-
	Adu07g02005	815	MobiDBLite	consensus disorder prediction	1	92	-	-
	Adu07g02005	815	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED	47	245	-	-
	Adu07g02005	815	MobiDBLite	consensus disorder prediction	124	168	-	-
	Adu07g02005	815	MobiDBLite	consensus disorder prediction	281	313	-	-
	Adu07g02005	815	Pfam	SAD/SRA domain	342	495	IPR003105	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu07g02005	Adu-Chr7	65024935	65029563	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu07g02005	309	778	Su(var)3-9 homologs	AT5G04940	41.597	1.58e-103	332

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Adu07g02005		SAD_SRA	1.7e-47	CL0178

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu07g02005	K11420		-	aip:107626851	1350.11

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