Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g01978 ATGGGTGGTACCCTTTCATTCAATCCAATATTCAACCTCACATTTTCCTTTTTCCTCGTCACCATTACCACCACCGTAATTTTCATTGTTGCCGACGCCGACGACGATTCTAGAGAATCTCCCCCTTCATTCCCCAGTTTCCAAAACTCAACGAATAGGGTACCATCCACCAACGGCATATCGACAGGAAACTCCAACAATTTGAACAGAAAATCACAGCCATTAAAGCCAAGCACGATTATCGTGGTTGGTGTCTTAACCACCTTGTTCTCTCTTACATTTATTTTCCTTCTTTACATCAAGCATTGCATCCATAGGAATAACGAAAACCAATCCCATCAAGAAGGTGAGCCACTGCAGAGAAATGACTCTGGCATTGATCGTGGTGTTGTGGAAAAGCTACCGATTTTTCGATTTGGATCGCTAAGAGGACAAAAAGAAGGGTTGGATTGTGCAGTTTGCTTGAACAGGTTCGAGCACACAGATGTTCTTCGTTTGCTTCCAATCTGCAATCATGCTTTCCATGTAGATTGTGTAGACAAGTGGTTCGATGCGCATTCAACTTGCCCTCTTTGTCGCAATAGGGTGGAGCTTAAAGACATCGTCCCGAGGGAACAATTACAAGAACAAGGAGAAAGAGATGAACTAGTGGAGGATATTGAGAGAGGAACCTTTCGGAGAGTCTCGGGGAGGCACTCTTCGGTGTTGGGGGAAAGAGAAGGTGGCTTCTTGGAGATTATTACACATAATTCAAATGAGAAAAAGAATAAAAAAATGAAGTCATCTAGTAGCACGAGGTCATTTCACAGTTCTTCTAGAAGCTTCGGGGGCTTCGTTCGCCCAAGAAAGGACAAAACGTTAATGGCAAGGCAAGGGCAAGAAGGTAATTTTAGTAATAATAACAACAGAGGTAGTAACGCAGAGCACCATAGGTTGCAGCACCAAATTATTATTGATTCACCAGTGGCCTCTTTCGTTAGTTCTAACGGTAAAGGAGAGTCATCATCATCACATCCGCATCATAGATGGAGTGAAGTTCCACAATCGGATCTTTTGTACTTGACTTCTGAGATGATAATCAATGATGCTGCTTCTTCTGTACCTGGGGAAAGAAGAGCAACTCATAACCACATCGTTAGCAATGAGAATAAGAATAATGGCGGTTTGAAGAATTTGAGGAGTTTTTCAGAGGTTACGGGAATGAGCAGGTTCTTAGGAGGAAGCAAAGGAAAAGAAGATGGCAATCAACACTCTGTCGGGGTTGCTACAAGGTGGTCAGCTTGGAGCTCAAGGTCACAACGACCGCGAGCAAATGTTCAGTCGGGATCATAG 1332 0.4347 MGGTLSFNPIFNLTFSFFLVTITTTVIFIVADADDDSRESPPSFPSFQNSTNRVPSTNGISTGNSNNLNRKSQPLKPSTIIVVGVLTTLFSLTFIFLLYIKHCIHRNNENQSHQEGEPLQRNDSGIDRGVVEKLPIFRFGSLRGQKEGLDCAVCLNRFEHTDVLRLLPICNHAFHVDCVDKWFDAHSTCPLCRNRVELKDIVPREQLQEQGERDELVEDIERGTFRRVSGRHSSVLGEREGGFLEIITHNSNEKKNKKMKSSSSTRSFHSSSRSFGGFVRPRKDKTLMARQGQEGNFSNNNNRGSNAEHHRLQHQIIIDSPVASFVSSNGKGESSSSHPHHRWSEVPQSDLLYLTSEMIINDAASSVPGERRATHNHIVSNENKNNGGLKNLRSFSEVTGMSRFLGGSKGKEDGNQHSVGVATRWSAWSSRSQRPRANVQSGS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g01978 443 MobiDBLite consensus disorder prediction 419 443 - -
Adu07g01978 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 201 IPR013083 -
Adu07g01978 443 SUPERFAMILY RING/U-box 130 199 - -
Adu07g01978 443 Pfam Ring finger domain 150 193 IPR001841 -
Adu07g01978 443 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Adu07g01978 443 MobiDBLite consensus disorder prediction 406 443 - -
Adu07g01978 443 MobiDBLite consensus disorder prediction 41 71 - -
Adu07g01978 443 CDD RING-H2_PA-TM-RING 150 193 - -
Adu07g01978 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 58 433 - -
Adu07g01978 443 PANTHER RING-H2 FINGER PROTEIN ATL43 58 433 - -
Adu07g01978 443 MobiDBLite consensus disorder prediction 325 344 - -
Adu07g01978 443 MobiDBLite consensus disorder prediction 39 71 - -
Adu07g01978 443 MobiDBLite consensus disorder prediction 365 392 - -
Adu07g01978 443 MobiDBLite consensus disorder prediction 251 276 - -
Adu07g01978 443 SMART ring_2 151 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g01978 Adu-Chr7 64013161 64014492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g01978 75 432 C3H Transcription Factor Family AT5G05810 38.035 6.28e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g01978 K19041 - vvi:100259882 238.039