Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g01976 ATGGTGAGGCAAAAGATCAAGATAAAGAAGATAGACAACATAACAGCAAGACAAGTAACGTTTTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCACAAGAACTTTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTGCCACTGGGAGGCTCTTTGAATATGCTAGCTCCAGTATGAAGGACATAACTGCAAGGTATGCTCAGCATACACATGAGATAAGTAGATCAGAAAGACCTCTTGAACTGCAGCTGGAGAATGTCAATAACGATGAATTACGTAAGGAAGTTGCTGATAAAACTCACCAACTAAGGCAGATGAAAGGTGAAGATTTTCAAGGGATGAACCTACAAGACTTGCTACAACTGGAGAAAGCACTTCAAACAGGATTAAATCGCGTGATTGAGACAAAGGAAAAGCGGATCATGGATGACATCGCAGCACTCCAGAAAAAGGGAGACGAATTAGAACAAGAGAACAAGAAGTTAAAGCAAAAGATGGATATTGGCATGCAAGAAGTGGTGTCATCGGAGTCACTAAATAATGCATGCAGCTGCATCAGTAGTGCCGCTCCTTCTTCTCTTGAAGATCATTCCTCTGACACATCTCTTAAGTTAGGGTTGCCCTTCCCTAATTGA 645 0.4171 MVRQKIKIKKIDNITARQVTFSKRRRGIFKKAQELSVLCDAEVALIIFSATGRLFEYASSSMKDITARYAQHTHEISRSERPLELQLENVNNDELRKEVADKTHQLRQMKGEDFQGMNLQDLLQLEKALQTGLNRVIETKEKRIMDDIAALQKKGDELEQENKKLKQKMDIGMQEVVSSESLNNACSCISSAAPSSLEDHSSDTSLKLGLPFPN 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g01976 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu07g01976 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 208 - -
Adu07g01976 214 Coils Coil 92 112 - -
Adu07g01976 214 Coils Coil 141 175 - -
Adu07g01976 214 MobiDBLite consensus disorder prediction 192 214 - -
Adu07g01976 214 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 208 - -
Adu07g01976 214 Pfam K-box region 92 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu07g01976 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu07g01976 214 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu07g01976 214 CDD MADS_MEF2_like 12 74 IPR033896 GO:0000977|GO:0045944
Adu07g01976 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu07g01976 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu07g01976 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu07g01976 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu07g01976 214 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Adu07g01976 214 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Adu07g01976 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g01976 Adu-Chr7 63903728 63913351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g01976 1 212 MADS-box Gene Family AT2G22540 52.479 2.55e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu07g01976 K-box 8.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g01976 - - vvi:100260900 251.521