Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g01678 ATGACAGAAGTTGTAGCAGAACTCGATTTGAATCAACAGCCTTTGCATGACATAGAAGAGCGAATTAGACGCCTAGAAGGCATAATTTTCAGAGTTAGGCAGCGGCAGAGGTGGTGCCGTAGTGATAGTCCTGTCCGAATGACTACATTCGCCGGAGAAGTGTTGGTTGATGGGGTTCAAGATGAAGGCAGACCACAGCTGGAAGAAGTAGAGGCCGGAGATGATGTCAAAGAAAATGGTAATGTGGAAAGCAGCAGTTGTAGGGGCAAAAGGAAGGCATCTGCATATTTGGTTGCTAAGGCGCTGGGGATGGAAACTAACACCGATAAGGCAAAGGGACGCGCAGGAAACTATTTTGATTGTAACATATGCTTGAAAATGGCAAGAGATCCTGTTTTGACTTGCTGCGGTCACTTGTTCTGCTGGCCCTGCTTCTTTCGCTTGTCGTATGCTTATGCAAATGCTAGGGAATGCCCTGTATGTGAAGGAGAGGTCATGATCACATGCATTACTCCAATTTATGGATCTGTAGGTGTCAATGACAGTGATCAGCTAGAATCAGAAGAGAATGGTTGTGAAATTCCTGCTCGACCTTGTGCGCGCAGAGTTAAGGTTAGCAAGGTGAAGTGTTTCAGAAACCGTGGTTTTCCAATAAATAATCCCCGTACTTCAGCTCAAAGTTCAAGTACAGTAATCCAAGGAATCGCCTTACCTTCACCGCCAATCACTCCGCCGCAAAGACCTTTAGAGGGACTTGATTCCTATCTTGGAAGTGACTCTGAAGGAAGCACCATGCAGCTGAATCATAATGCTGCTTCGAACCATTCAGAGTCACATAATCAAAATGTTATTGCTGCAGCCGCCACATCTTCTGTTACTCCTTTGACTATGAATGATGATGCTATTGCTATTACAGATTCCAGTACACAAATCACCAATAGTAGTGGACAGATTATTTCTTCCGACCGTTCATCTCTAGTCGAATTGATGTAG 993 0.4471 MTEVVAELDLNQQPLHDIEERIRRLEGIIFRVRQRQRWCRSDSPVRMTTFAGEVLVDGVQDEGRPQLEEVEAGDDVKENGNVESSSCRGKRKASAYLVAKALGMETNTDKAKGRAGNYFDCNICLKMARDPVLTCCGHLFCWPCFFRLSYAYANARECPVCEGEVMITCITPIYGSVGVNDSDQLESEENGCEIPARPCARRVKVSKVKCFRNRGFPINNPRTSAQSSSTVIQGIALPSPPITPPQRPLEGLDSYLGSDSEGSTMQLNHNAASNHSESHNQNVIAAAATSSVTPLTMNDDAIAITDSSTQITNSSGQIISSDRSSLVELM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g01678 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 231 IPR013083 -
Adu07g01678 330 SUPERFAMILY RING/U-box 117 167 - -
Adu07g01678 330 CDD RING-HC_AtRMA_like 119 163 - -
Adu07g01678 330 Pfam zinc-RING finger domain 121 162 IPR001841 -
Adu07g01678 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 262 IPR045103 GO:0005783|GO:0006511|GO:0061630
Adu07g01678 330 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 12 262 - -
Adu07g01678 330 ProSiteProfiles Zinc finger RING-type profile. 121 162 IPR001841 -
Adu07g01678 330 SMART ring_2 121 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g01678 Adu-Chr7 47387420 47389430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g01678 78 204 C3H Transcription Factor Family AT3G58030 42.520 9.51e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g01678 K10666 - gmx:100778919 190.274