Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g01178 ATGATTATTATATGTAGTATCTCTTCTTCTCTTCTCCTTCGTCCCATAATTGTGGTCCACCATTGTGATTTAACGGAGATTCCATTGACATGTGCAAAGGATGAAACTTTTGATGAACTTGGTGCAGAGTTTCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATAAAAAGAAAGGTTCGGACTTTGTAGATAGTAGTGGAGAATATGGTGGTGAGAAATTGGGTGGTGAAGGTGGTTGTGCCCCCGAAAACAGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTAAAGTTGAAGGTGATGAAGAAGTAGAGAAGAGGAAAGATAGAAGCAATGGTAGAGTTCAACAACAATATCCATTAAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTAGTAGGAGGAAGAATCAGATATTAATTATTCTTCTGATCCTATTATCAATCTAG 525 0.3733 MIIICSISSSLLLRPIIVVHHCDLTEIPLTCAKDETFDELGAEFHKKLDLKDEDERVAENKKKGSDFVDSSGEYGGEKLGGEGGCAPENRDFDVDGDGNGDDEVKVEGDEEVEKRKDRSNGRVQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLSRRKNQILIILLILLSI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g01178 174 SUPERFAMILY CCCH zinc finger 130 159 IPR036855 GO:0046872
Adu07g01178 174 SMART c3hfinal6 130 157 IPR000571 GO:0046872
Adu07g01178 174 Gene3D - 103 164 - -
Adu07g01178 174 PANTHER PROTEIN PHOSPHATASE RELATED 40 163 - -
Adu07g01178 174 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Adu07g01178 174 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 156 IPR000571 GO:0046872
Adu07g01178 174 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 40 163 - -
Adu07g01178 174 MobiDBLite consensus disorder prediction 58 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g01178 Adu-Chr7 17731347 17732035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g01178 127 167 C2H2 Transcription Factor Family AT5G16540 48.780 4.33e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu07g01178 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g01178 - - adu:110280340 167.162