Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g01174 ATGGCACTTTCTACTACTACACTTCTAGTTGCTCTCTTTGTTTTACTTATTGGTATCAATCTTCAAGGTGCCATTGCTGACTATGGTGGTGGTTGGCAGGGTGCACATGCCACTTTCTATGGTGGTGGTGATGCTTCTGGCACAATGGGAGGAGCATGTGGTTATGGAAATTTGTATAGCCAAGGATATGGAACGAACACTGCAGCACTAAGCACAGCATTGTTCAACAATGGATTGAGCTGTGGTGCTTGCTATGAGATGAGGTGTGATGATGATCCAAGATGGTGCAAGCCTGGCTCCATTATTGTCACTGCTACAAACTTTTGTCCCCCAAATTTTGCTTTGGCTAACAACAATGGTGGATGGTGCAACCCTCCCCTTCAACACTTTGACATGGCTGAACCTGCATTCCTTCAAATTGCTGAGTATAGAGCTGGAATTGTGCCTGTTGCATTTAGAAGAGTGCCTTGTATGAAAAAGGGAGGAATAAGGTTCACCATCAATGGCCATTCATACTTCAACCTAGTTTTGATCACAAACGTCGCGGGTGCGGGGGACATCCATGCAGTCTCAATCAAAGGGTCAAGAACTGCCTGGCAAACAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTTAACGGACAGAGCCTCTCTTTTCAAGTCACCGCCAGTGACGGTAGAACCGTCACAAGCTTCAACGTGGCACCAGCTAACTGGCAGTTTGGTCAAACTTTCCAAGGTGTTCAGTTTTAA 765 0.4575 MALSTTTLLVALFVLLIGINLQGAIADYGGGWQGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCDDDPRWCKPGSIIVTATNFCPPNFALANNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLITNVAGAGDIHAVSIKGSRTAWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSFNVAPANWQFGQTFQGVQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g01174 254 Gene3D - 162 254 IPR036749 -
Adu07g01174 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Adu07g01174 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Adu07g01174 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Adu07g01174 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Adu07g01174 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Adu07g01174 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Adu07g01174 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Adu07g01174 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Adu07g01174 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Adu07g01174 254 Pfam Lytic transglycolase 67 151 IPR009009 -
Adu07g01174 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Adu07g01174 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Adu07g01174 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Adu07g01174 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Adu07g01174 254 Gene3D - 20 158 IPR036908 -
Adu07g01174 254 SMART dpbb_1 67 152 IPR007112 -
Adu07g01174 254 PANTHER EXPANSIN 7 254 - -
Adu07g01174 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Adu07g01174 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Adu07g01174 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Adu07g01174 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Adu07g01174 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Adu07g01174 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Adu07g01174 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Adu07g01174 254 PANTHER EXPANSIN-A15 7 254 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g01174 Adu-Chr7 17517438 17519537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g01174 8 254 Expansin Gene Family AT2G40610 79.032 4.07e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g01174 - K20628 gmx:100777044 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu07g01174 07 17517438 17519537 Adu07g01174 07 17517438 17519537 ECH
Adu07g01174 07 17517438 17519537 Adu02g02457 02 90329388 90334933 ECH
Adu01g00529 01 7224263 7227084 Adu07g01174 07 17517438 17519537 ECH
Adu01g00529 01 7224263 7227084 Adu07g01174 07 17517438 17519537 PCT