Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g01173 ATGGCTAGATCCAAAGTGAAGCTTGCATACATAACCAACGATGCTGCAAGGAGGGTTACATACAAGAAGAGGAAAAGAGGGATGATGAAGAAAATTAGTGAACTAAGCACCCTTTGTGGGGTTGATGCCTGTGCCATAGTCTACAATTCACGTCAAGATGCTCATCCTCTTGACGAGCCCGAAGTTTGGCCCTCCCGCATGGGAGTTGAAAGGGTGATTGAGAAATTCCGGCAATTGCCGGAAATTGATCAAAACAGGAAGAGGATGGATCATGCGGATTACTTGACTCTGAGGATCGCGAAAGAGAAGGAGAAACTGAAGAAGAAAAGGCATGACAACAACGAGAAGGAGTTCCAGCTTCGCATGCATGATTTCATGCTAAGAAATAGGCTTCCAGAGAATCTGAGCTTCTTTGATTTGAATAACTTGGCTTATCATACTGACATGAAGCTTAGGGAGGTCGACATGCGGTTGCAGATGCTTCTGGAAAAAGAGAACAAGGAGATGATGATGGATTTCGCACCGTCGTCACAGCCGATTCATGGTCCTTATCATCCCCTTGAGAGTGGAGAGTCTAGTGGGAAGAACATGAACCATTTTTCATTTATGGAGGAAAACAACCACAACAACTACAATAGTGGTTTTGACATGATTCTTGGAAATGCAAGAATTAACTAA 678 0.4366 MARSKVKLAYITNDAARRVTYKKRKRGMMKKISELSTLCGVDACAIVYNSRQDAHPLDEPEVWPSRMGVERVIEKFRQLPEIDQNRKRMDHADYLTLRIAKEKEKLKKKRHDNNEKEFQLRMHDFMLRNRLPENLSFFDLNNLAYHTDMKLREVDMRLQMLLEKENKEMMMDFAPSSQPIHGPYHPLESGESSGKNMNHFSFMEENNHNNYNSGFDMILGNARIN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g01173 225 SUPERFAMILY SRF-like 3 98 IPR036879 GO:0003677|GO:0046983
Adu07g01173 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu07g01173 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Adu07g01173 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu07g01173 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 - -
Adu07g01173 225 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Adu07g01173 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu07g01173 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu07g01173 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu07g01173 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 202 - -
Adu07g01173 225 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g01173 Adu-Chr7 17494306 17495354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g01173 1 161 Type I MADS-box Gene Family AT5G48670 47.531 3.38e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu07g01173 SRF-TF 3.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g01173 - - aip:107606857 409.838