Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g01049 ATGGTTTTGTCTTGGACAAGAGGGAGGGTGTTCCGGCGCGCTCGGAAGGGGAAGGATCTCCAAGTCAACGATTTAGATGTCGAGATTTCAGTCCCTTCCCACTTCCGGTGTCCGGTCACCCTCGACCTAATGAAGGATCCAGTAACAGTATCCACGGGGATTACCTACGACAGGGACAGTATAGAGAAATGGATCGAGGAAGGGAACAACACGTGCCCGGTAACAAAAAGGGTCTTGACAACCTTTGACATGATCCCCAACCATGCCCTTCGGAGGATGATCCAAGATTGGTGCGTGGAGCACCGTTCTTTTGGAATCGAGAGGATCCCTACTCCGAGGATCCCCGTTACACCGTACGAGGTTTCGGACACGTGTACGAAGATCGTGAATGCCGCGAAACAAGGCGATGAAAACAAGTGCAGGGAGTTGGTGAGGAAGATCAAGGGTTGGGAGAAGGAGAGTGATAGGAACAAGAGGTGCATAGTTGCAAATGGTGCTCCTCTTGCTCTGGTCAACGCCTTTGACTTTTTCTCATCATGGGGTTTTGAGGAGAATAATAATGTTAGTAGTTTGTTAGAGGAGATCTTGGGTGTGTTGGCATGGATGAGGCCTATTGGTGAGGAGGGTAAGTCCATGTTGGGTTCAAAGAATTCAATGAGTTGCATGGTTTGGTTCTTGTTGAAGGGTAATATAGACCTTTCCATAAAGCAAAGTGTTGCCATGTTGCTCAAGGAAGTTCCAATTGAAGTGTTGGCAAATACCCAAGGTGTTGTTGAAGGCTTGGTTAAGATGATTAAGGAGCCTATTGGGAGTGCCTCAATTACAAAGGCATGTTTATCAATGATTTTTAAATTGGTAACATATTCCAAGGGTAAAGATGTAATTTCACAAAGATTTGTGGAATTGGGTTTGGTTGAAGTTTTATTGGAGACAATTGTTGATTGTGATAAAGGGGTGTGTGAGAAGGCCTTAGGAGTATTGGATTCAATTTGTGGGACAAAAGAAGGGAAGGAAATTGCCAAGGCTAATGCTCTTACAATTCCACTTGTGGTTAAGAAACTTCTGAGGGTTTCTGAATTGAGTTCTAGCTTTGCGGTTTCAATTGTTTGGAAGATTTGTGATAAGGCCCAAGAAGAAGAAGGGGTTTTTGTTGAGGCACTTCAAGTTGGGGTGTTCCAGAAGCTTCTTGTTTTGTTGCAAGTTGGGTGTGGTGAGAGCACAAAGGAGAAGGCCACTGAGTTGTTGAAGTTGTTGAATGGTTATAGAAGCAAGGTAGATTGTGTTGATACATCTTTGGAATTTCAGCACCTTAAGAAGCCATTCTAA 1326 0.4442 MVLSWTRGRVFRRARKGKDLQVNDLDVEISVPSHFRCPVTLDLMKDPVTVSTGITYDRDSIEKWIEEGNNTCPVTKRVLTTFDMIPNHALRRMIQDWCVEHRSFGIERIPTPRIPVTPYEVSDTCTKIVNAAKQGDENKCRELVRKIKGWEKESDRNKRCIVANGAPLALVNAFDFFSSWGFEENNNVSSLLEEILGVLAWMRPIGEEGKSMLGSKNSMSCMVWFLLKGNIDLSIKQSVAMLLKEVPIEVLANTQGVVEGLVKMIKEPIGSASITKACLSMIFKLVTYSKGKDVISQRFVELGLVEVLLETIVDCDKGVCEKALGVLDSICGTKEGKEIAKANALTIPLVVKKLLRVSELSSSFAVSIVWKICDKAQEEEGVFVEALQVGVFQKLLVLLQVGCGESTKEKATELLKLLNGYRSKVDCVDTSLEFQHLKKPF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g01049 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 106 IPR013083 -
Adu07g01049 441 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Adu07g01049 441 Gene3D - 122 426 IPR011989 -
Adu07g01049 441 SUPERFAMILY RING/U-box 27 106 - -
Adu07g01049 441 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 441 - -
Adu07g01049 441 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Adu07g01049 441 PANTHER WDSAM1 PROTEIN 8 441 IPR045185 GO:0061630
Adu07g01049 441 CDD RING-Ubox_PUB 35 76 IPR045210 -
Adu07g01049 441 SUPERFAMILY ARM repeat 143 418 IPR016024 -
Adu07g01049 441 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Adu07g01049 441 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g01049 Adu-Chr7 14759296 14761088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g01049 28 441 U-box Gene Family AT5G37490 45.283 6.18e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g01049 - - gmx:100795913 605.134