Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu07g00989 | ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGGATAAAGAGCAGCAGGAGTAACAGAGAAAGAGGTAGAGGACGTGGCAGAGCCCGAGCTCACACTGGCCGTGGGACAGGCAGGAATCCTGGTGTTGGTGGAACAATAACTGGTGCTGCTCGTAGAGGTCTTAATACCCGGCCGTCATCCTATGCCATTGCCAAGTCCATCCGGAGGACCGGGCCTTTTCCTTGGCAGCAAGATTTGTTTGAGGATAGCATAAGAGCTGCAGGGATACAAGGGGTTGAAGTTGGTACAAAGTTGTACATTTCAAATTTGGACCATGGAGTAACCAATGAAGACATAAGGGAGCTTTTTTCTGAGATTGGAGACTTGAAGCGCTGTGTTGTTCATTATGATAAAACTGGACATCCAAGTGGTTCTGCTGAAGTTGTCTATACAAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAATAATGTGCTTCTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAACGCAGAATTGCCTATAACTGCTCGGGTAAATGTATCGGGGGTAAATGGGCGAAGGAAGAAAAGGACAGTTGTGATGATGTCTCGTGGAGGTCAAACTGGAGGTGGTGCTGGGCTCAGTCGCGCTGCCACTCGGGTACAACGTAGTGGGGCAAGGCCAAAGGGTGGAACTTCAAGTGGCCGAGGCCGTGTTCGCAGCCGTGGACGTGGCAGGGTTGGACGCCAAGGGCGTGGGAAAAAGGAGAAGTCAGCTGAGGAACTTGACAAGGAGCTGGAAACCTACCATGCTGAGGCTATGAACATCTCGTAG | 831 | 0.4958 | MASSLDMSLDDRIKSSRSNRERGRGRGRARAHTGRGTGRNPGVGGTITGAARRGLNTRPSSYAIAKSIRRTGPFPWQQDLFEDSIRAAGIQGVEVGTKLYISNLDHGVTNEDIRELFSEIGDLKRCVVHYDKTGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPITARVNVSGVNGRRKKRTVVMMSRGGQTGGGAGLSRAATRVQRSGARPKGGTSSGRGRVRSRGRGRVGRQGRGKKEKSAEELDKELETYHAEAMNIS | 276 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu07g00989 | 276 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Adu07g00989 | 276 | MobiDBLite | consensus disorder prediction | 201 | 276 | - | - | |
Adu07g00989 | 276 | CDD | RRM_THOC4 | 97 | 171 | - | - | |
Adu07g00989 | 276 | PANTHER | RNA AND EXPORT FACTOR BINDING PROTEIN | 1 | 275 | - | - | |
Adu07g00989 | 276 | Coils | Coil | 251 | 271 | - | - | |
Adu07g00989 | 276 | SMART | FoP_duplication_2 | 203 | 276 | IPR025715 | - | |
Adu07g00989 | 276 | SMART | rrm1_1 | 98 | 170 | IPR000504 | GO:0003723 | |
Adu07g00989 | 276 | Gene3D | - | 92 | 173 | IPR012677 | - | |
Adu07g00989 | 276 | Pfam | C-terminal duplication domain of Friend of PRMT1 | 215 | 270 | IPR025715 | - | |
Adu07g00989 | 276 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 97 | 174 | IPR000504 | GO:0003723 | |
Adu07g00989 | 276 | PANTHER | THO COMPLEX SUBUNIT 4C | 1 | 275 | - | - | |
Adu07g00989 | 276 | MobiDBLite | consensus disorder prediction | 251 | 269 | - | - | |
Adu07g00989 | 276 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 99 | 167 | IPR000504 | GO:0003723 | |
Adu07g00989 | 276 | SUPERFAMILY | RNA-binding domain, RBD | 96 | 193 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu07g00989 | Adu-Chr7 | 13434628 | 13439469 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu07g00989 | 96 | 171 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 38.158 | 6.76e-11 | 60.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu07g00989 | K12881 | - | gmx:100820344 | 345.51 |