Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g00892 ATGGCTCCTCCTTCAGATATCAATCACTTTTCTCATCCATGTATATATGGGGATTATAGTTCTTCACGCTCAGAGAGAAGGCCTAGTTTCATGAAATGGTTAAGTAGGCTTTTCAAAGGAGGGTCCAATAGAGGAAGAGGTGGCCGTCGCCTGCAAGAACCGGACGAGGAAAACATCGCTTGGCGCGCACCCCCTAGACCATTTGATGATGGTTCTAGAGCTCATAACAGGGAGAATGATGATCTCGGCCATGCGATGTCACGATCTTCAGCAGAAGATTTAAAGCGACCAAATGCACATGAAGGATATAATTGGGGGACAGACAATGATGATTATGGAAAAGCACTTCAAGCTGCATACCCTCCATATAATGCTGCTCCATATTACCCCAGAGATTATAGAAAAATATGTGGAGGGTGTAACCAGGAGATACTCTATGGAAATTGTTTGGGATGCTTGGATACTTATTTTCATCCAGATTGCTTTCGTTGTCACGCTTGTCAGTATCCCATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGATTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAATACTGTCCATCTCATGAATATGATTATACATCTCGCTGCTGCAGTTGCGAAAGATTGGAGCCTCGGAATGTAAAATACTATAGACTTGAAGATGGAAGAAGTTTGTGCATGGAGTGCATGGAATCTGCTATAATAGACACTGGTGATTGCCAGCCTCTTTATCATTCTATCAGAGATTACTATGAAGGGATGAATATGAAAATAGGTCAACAAATTCCCATGCTTCTTGTGGCCAGAGAAGCACTCAATGAAGCTATTGTTGGGGAGAAAAATGCTGTTCATCACATGCCAGAAACAAGGGGCATATGCCTTTCAGAAGAGCAGACTATCACCAGTATACATAGAAAGCCAAGACATGGAGGCCATCGACGAATGACGAGAACGCAAAATCAAATGCTGGTTAGAAGATGTGAAGTTACAGCAATTCTTGTCCTATATGGTCTTCCAAGGCTACTCACAGGTGCCATCCTTGCACATGAGTTAATGCATGCATGGTTAAGACTTAAAGGTTACCGCAACCTTAATCCTGAAGTAGAGGAAGGTATATGTCAGGTTCTCTCATACATGTGGCTTGAGTCAGAAGTAATGCCATCAACATCTGCAGCAGCAGCATCATCATCTTATCCTTCTTCATCCTCCTCTTCCTCAAAGAAAGGAGCAAAGTCTCATGTTGAAAACAAGTTGGGAGAGTTTTTCTTGAATCAGATTGCAAATGATTCTTCCCCTGCTTATGGTGGTGGCTTTAGAGCTGCAAATGAAGCTGTTAATAAATATGGTTTACGTGCCATTCTTGACCATATTCGTTACACTGGTCTTCTACCAGAGTAG 1497 0.4235 MAPPSDINHFSHPCIYGDYSSSRSERRPSFMKWLSRLFKGGSNRGRGGRRLQEPDEENIAWRAPPRPFDDGSRAHNRENDDLGHAMSRSSAEDLKRPNAHEGYNWGTDNDDYGKALQAAYPPYNAAPYYPRDYRKICGGCNQEILYGNCLGCLDTYFHPDCFRCHACQYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDYTSRCCSCERLEPRNVKYYRLEDGRSLCMECMESAIIDTGDCQPLYHSIRDYYEGMNMKIGQQIPMLLVAREALNEAIVGEKNAVHHMPETRGICLSEEQTITSIHRKPRHGGHRRMTRTQNQMLVRRCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSTSAAAASSSYPSSSSSSSKKGAKSHVENKLGEFFLNQIANDSSPAYGGGFRAANEAVNKYGLRAILDHIRYTGLLPE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g00892 498 ProSitePatterns LIM zinc-binding domain signature. 137 171 IPR001781 -
Adu07g00892 498 CDD LIM_DA1 137 189 - -
Adu07g00892 498 MobiDBLite consensus disorder prediction 1 25 - -
Adu07g00892 498 Pfam Protein DA1 286 492 IPR022087 -
Adu07g00892 498 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 497 - -
Adu07g00892 498 Gene3D Cysteine Rich Protein 123 194 - -
Adu07g00892 498 ProSiteProfiles LIM domain profile. 135 195 IPR001781 -
Adu07g00892 498 PANTHER PROTEIN DA1-RELATED 2 20 497 IPR045218 -
Adu07g00892 498 MobiDBLite consensus disorder prediction 46 99 - -
Adu07g00892 498 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 162 - -
Adu07g00892 498 MobiDBLite consensus disorder prediction 38 103 - -
Adu07g00892 498 SMART lim_4 136 188 IPR001781 -
Adu07g00892 498 Pfam LIM domain 137 190 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g00892 Adu-Chr7 11573874 11578633 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Adu07g00892 DA1-like 7.7e-96 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g00892 - - aip:107608934 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu07g00892 07 11573874 11578633 Adu07g00892 07 11573874 11578633 ECH