Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g00877 ATGTCAATGTTGGCTACTGAGGACAACAACAACAACAACAATAATAAGCCTCATGTTGTTGTTGACGTAGACAATAATGTCTCTCAAGGTAGTACTAGTAGCTGTGTCGGCAATGAAGGTTGTGCTTCTTCTGAGACAAGTGAGGAACAACAACAAAGTAATTCCCATGATTCTGGTTCCGAGATTGTTGCTGGAGCAATTGAGAAAGGGAGAGGGTCTTCAGTTTCATCAGATCAGTGTTCTGTGGAGCTTGTGGATCTGGAGAGTGATGTGGATAAGGTACGGCACTTAGATCATGATAATAATAATAATAAGGTGGAGAGGGATTGCAGGATTTGTCACCTAAGCATGGATATGACCAACCATGAATCTGGTGGGTCCCCCATTGAACTTGGTTGTTCTTGTAAGGACGATTTGGCTGCTGCACATAAACAATGTGCTGAGGCTTGGTTCAAGATCAAAGGCAACAAAACTTGTGAAATATGTGGATCAATTGCACACAATGTAGCCGGCACAATCGAAGTTCAAATGACAGAACAGTGGAATGACTCCAATGATGCTTCCATGGCTCCACCAACCGGGCCTGCACCCCCGGCCGGCGAAACTCGAAACTTCTGGCAGGGACATCGTTTTTTGAATTTCCTACTAGCTTGTATGGTCTTTGCATTTGTCATATCCTGGCTTTTTCACTTCAATGTGCCCTCATGA 708 0.4407 MSMLATEDNNNNNNNKPHVVVDVDNNVSQGSTSSCVGNEGCASSETSEEQQQSNSHDSGSEIVAGAIEKGRGSSVSSDQCSVELVDLESDVDKVRHLDHDNNNNKVERDCRICHLSMDMTNHESGGSPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGTIEVQMTEQWNDSNDASMAPPTGPAPPAGETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g00877 235 MobiDBLite consensus disorder prediction 25 59 - -
Adu07g00877 235 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 235 - -
Adu07g00877 235 MobiDBLite consensus disorder prediction 1 20 - -
Adu07g00877 235 Pfam RING-variant domain 110 162 IPR011016 GO:0008270
Adu07g00877 235 SMART ringv_2 109 163 IPR011016 GO:0008270
Adu07g00877 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 171 IPR013083 -
Adu07g00877 235 PANTHER ZINC FINGER, RING-CH-TYPE 21 235 - -
Adu07g00877 235 SUPERFAMILY RING/U-box 105 165 - -
Adu07g00877 235 CDD RING_CH-C4HC3_MARCH 110 163 - -
Adu07g00877 235 ProSiteProfiles Zinc finger RING-CH-type profile. 102 169 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g00877 Adu-Chr7 11334109 11337595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g00877 16 235 C3H Transcription Factor Family AT5G05830 52.941 2.34e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g00877 - - adu:107457785 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g01624 04 74359448 74362520 Adu07g00877 07 11334109 11337595 ECH
Adu07g00877 07 11334109 11337595 Adu07g00877 07 11334109 11337595 ECH