Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g00536 ATGGCTACCACCTTCAACCTCATCAAGGACATCGACGCATCTCAAGACACCCTGACCTATAGGATAAATGTCAGGGTTATTAAAATTTGGTCCCTGTCTACGGCGGAGCAAAAATACCAAAAACCAATGTTGGAGCTGGTGGTCATGGATCATTTGGGAGATCGCATCCAATGCTCAATTAGAAACCATCAAAGAAGGCAGTTTGAGCATGAAGTGTCTGAGGGGAGTATATACACAATCTCCAACTTCACAGTCTCCTCGAATGATTTAAAGTACAAGGCCACTAACCATGCTAGCAGAATATATTTCAAAAGGGATACTCAAGTGAGGATGGTTCAGGATCCAACCTTTCCTCAACATGTTTTTCGCTTCATGCCCAACGAATTAATCCTTAACCACACTAATGCACAATCTCATCTAATTGGTACAATGGGTATATCAAATACCAATCACAATTCTATTATGCACATCAATGCTGATTTTCAGGAGGTGAAGGACTTTCGAAAGAGTCTTATAATGTCAGGAGTCCCATCTGCGAATCAACTCACCCAAATAGTTGCTGAACCAGCATATTCCCTTGAAGAAGACCTCATCAACAATTCCATTTATAAGCCCATATCTGAGCTAAAAGAGACATTTGAGGCTGGAACCTTTGTCACGATTGGCACCGTCATTGCCATTGATCCGAAGAACGGTTGGTGGTACAAAAGTTGCAAACAATGCTTCACTTCCCTAAGGGAAGCAGAAAATTCATACCATTGTGCAAAGTGCAACTCACACCCCTTGACACACACCCCAAGGTATAGCATTAATATGAAGGTTGCTGATGACACTGACACAGCTATTTTCTTGCTGTACGACAAAGAAGCCTCCAGATACTTGGGTATCTCTGCCTCTGATCTAAGGCTCGCACAACTAACTAGGGGAGGAGTCCATGAGGAATATCCAACTGAGCTGAATGCATTGGTGGGGAAGAAATTCCTGTTCAAGTTAATTGTTAAGATGGAAGATGTCAATGCATTCCAACCCTGCAAGATTGTTGTTGCTAAACTTTGTGAGGAGGACACAATTATGAACAAGTTTCTTGAAAAGAACAACATATGTGAGCAAAGTGTGGGTGTTGAGAATTCTGAATTGCTTAGCATGAACACCGACTCTGCTGAGACCCCCAAGGACACAAGTGCCCCATCTACTGAGAATTCAATGGAGGTTCCGTTGGATGCATTCTCAACCCCCAAGAGCAAGATAATTACTGGTGGATGGTCCAAGAAACTAATTGATGTCTACCCAGAAGATCTTGATGCATCGTCTTCAAAGCGTAGGAAGGCCACCAACGGCGACAAGGCAACTCTTGCCAAAGAACATCATGATTAG 1374 0.4287 MATTFNLIKDIDASQDTLTYRINVRVIKIWSLSTAEQKYQKPMLELVVMDHLGDRIQCSIRNHQRRQFEHEVSEGSIYTISNFTVSSNDLKYKATNHASRIYFKRDTQVRMVQDPTFPQHVFRFMPNELILNHTNAQSHLIGTMGISNTNHNSIMHINADFQEVKDFRKSLIMSGVPSANQLTQIVAEPAYSLEEDLINNSIYKPISELKETFEAGTFVTIGTVIAIDPKNGWWYKSCKQCFTSLREAENSYHCAKCNSHPLTHTPRYSINMKVADDTDTAIFLLYDKEASRYLGISASDLRLAQLTRGGVHEEYPTELNALVGKKFLFKLIVKMEDVNAFQPCKIVVAKLCEEDTIMNKFLEKNNICEQSVGVENSELLSMNTDSAETPKDTSAPSTENSMEVPLDAFSTPKSKIITGGWSKKLIDVYPEDLDASSSKRRKATNGDKATLAKEHHD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g00536 457 PANTHER REPLICATION FACTOR A 1, RFA1 221 375 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu07g00536 457 MobiDBLite consensus disorder prediction 384 407 - -
Adu07g00536 457 SUPERFAMILY Nucleic acid-binding proteins 5 115 IPR012340 -
Adu07g00536 457 Pfam Replication factor-A C terminal domain 219 353 IPR013955 -
Adu07g00536 457 MobiDBLite consensus disorder prediction 433 457 - -
Adu07g00536 457 Pfam Domain of unknown function DUF223 45 135 IPR003871 -
Adu07g00536 457 Gene3D - 196 362 IPR012340 -
Adu07g00536 457 PANTHER BNAC01G35430D PROTEIN 221 375 - -
Adu07g00536 457 CDD RPA1_DBD_A_like 21 109 - -
Adu07g00536 457 PANTHER REPLICATION FACTOR A 1, RFA1 21 145 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu07g00536 457 SUPERFAMILY Nucleic acid-binding proteins 204 357 IPR012340 -
Adu07g00536 457 CDD RPA1_DBD_C 206 339 IPR013955 -
Adu07g00536 457 Gene3D - 6 114 IPR012340 -
Adu07g00536 457 PANTHER BNAC01G35430D PROTEIN 21 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g00536 Adu-Chr7 5539048 5541589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g00536 218 348 Core DNA Replication Machinery Family AT5G08020 28.788 1.71e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g00536 - - ahf:112707100 437.187