Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g00478 atgCCCAACCCAGAAAAAAAGGCCAACAAAGCAGCCATAAGTCTCAGGAAGGGTAACACCCGTCTTCCGCCGGAAGTGAACCGCGTCCTCTACGTCCGAAACCTACCTTTCAACATCACCAGCGAAGAGATGTACGACATTTTCGGAAAATACGGCGCCATTCGCCAGATCCGAATCGGCACTAACAAGGACACTCGCGGCACCGCCTTCGTCGTCTACGAGGATATCTACGACGCCAAGACCGCCGTCGACCACCTCTCCGGTTTCAACGTTGCGAATCGGTACCTTATTGTTCTGTATTACCAGCAAGCGAAGATGAGCAAGAAGTTCGATCAGAAGAAGAAGGAGGATGAGATTACGAAGATGCAGGAGAAGTACGGTGTCTCCACCAAAGATAAGGCTCAAGTGATTCTGGTTTAA 420 0.5024 MPNPEKKANKAAISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEITKMQEKYGVSTKDKAQVILV 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g00478 139 PANTHER SPLICING FACTOR 3B SUBUNIT 6 15 125 - -
Adu07g00478 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 103 IPR000504 GO:0003723
Adu07g00478 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 96 IPR000504 GO:0003723
Adu07g00478 139 PANTHER SPLICING FACTOR 3B 15 125 - -
Adu07g00478 139 Gene3D - 2 117 IPR012677 -
Adu07g00478 139 SUPERFAMILY RNA-binding domain, RBD 9 111 IPR035979 GO:0003676
Adu07g00478 139 SMART rrm1_1 29 99 IPR000504 GO:0003723
Adu07g00478 139 CDD RRM_SF3B14 26 102 IPR034150 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g00478 Adu-Chr7 4721517 4723348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g00478 30 122 Eukaryotic Initiation Factors Gene Family AT2G36660 31.579 2.65e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g00478 K12833 - gmx:100802877 244.588