Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g00449 ATGGCTTTCTTTAGGAATTTTCTAAATGATAATGTCTCCCATAGCGTCATTGAAGATAAAGACCAAGAACAGAATGCTGATAGAGTACATAGATCAGTAGGTAATGAGTGTGTGGATGCAACGTCTGGTGAGAAGGAATTTGATATGAACATGGAGGCACAATACCAGAGTGATGGTGAGCCAGATGGGGCTAATGGAATGCAAAATGAAGCAACAACTGATGATGGAGTTGGTGAGAGAGAATCAAACTTAGAGACTACTGGTAGTAAAACAGCTATGGTTGGAGAGTGGGGTTCAACATTTTTTCAGGACTGCCGGCCTATGTGCCCTCAGGATGGTTCTGACTCTGGGCAGGAATCGAAAAGTGGATCAGAATATAGAAATGAAGATGTCTCTGAAGAAAATTCGTTTGATGGAAGAGGGGACAGATTAGACTCAGAGGATGATGAAGGACAAAATGAAGCAGGAAAAGCTCCAAGAGGCCAGTCTGTGAATTCATGGCCTCATCGGATGTCCAACAATGCCAACAGCACTGGGCGTAGGAGGTCTAGAATTGTAGATGATGGCGAAGATGATGATGGTGATAATGATGATGACGACGGTGATGCTGATTATGAGGAGGAGGATGAAGGAGATGAAGATGACCCGGATGATGCAGACTTTGAGCCTGCAGCAGGTGGTCGTGCTGCAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCTGATGAAGATGATGACAGTGATGTAAATCTAGATGTTTCAGACGATGATGATGACGACGACGATGACGATTCTTACTATGCCAAAAAACCCAAGGCAAGGCAAAGAGGTAAAGTTGGACGAAGCATAAAGTCTAGTAGAGATCGCAAAACATATGCTTCGTCTGGTCGACAGAGAAGAGTTAAATCTTTTGAAGATGAGGAATCAACAGCAGATGATTCTGACAGTGATAGTGATGAGGATTTCAAGAGCGTAAAGAAGAGAGGAGCTCATGTCCGCAAGAATAATGGTCGCTCTTCTGCAGCCAGTAGTTTATCTTTGCGCAACAGTGAGGTTCGCACGTCTAGTAGATCAGTTCGGAAGGTATCATATGTTGAAAGCGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCACAGAAGGAAGAGATTGAAGAGGATGATGGTGACTCTATTGAAAAAGTGCTTTGGCATCAGCCGAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTGATGAATCACTTGTTTGAGTCTGAAATTGATTGGAGCGAGATGGAATTCTTGATAAAATGGAAGGGCCAGTCGCATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAATCTTAGTGGTTTCAAGAAGGTTTTGAATTATACTAAGAAGATAATGGAGGACATTAGATACAGGAAGACAATCTCTAGAGAGGAGATTGAGGTCAATGACGTGAGTAAGGAGATGGATTTAGATATTATTAAACAAAACAGTCAGGTGGAAAGAATAATTTCAGATAGGATCATTAAAGATAATGGTGGCAATGTTATTCCTGAATACTTGGTCAAGTGGCAAGGATTATCCTATGCTGAAGCGACCTGGGAAAAGGACACTGATATTGCTTTTGCTCAACATGCTATTGATGAGTATAAGGCTCGTGAAGCTGCAATGTCTGTTCAAGGAAAGACGGTAGATTCCCAGCGCAAGAAGAGCAAATTAAGTCTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAGGGGTGGAAAGCTCCGTGATTATCAGCTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACGAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTAGTTGTACCACTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATCATTATATATGTTGGAACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTACAATGATAAAAAGCCTGGAAAACCTATTAAGTTCAATGCGCTGTTGACTACATATGAAGTAGTTTTGAAAGACAAGGCTGTTCTCTCCAAGATCAGATGGAGTTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCGCAGCTATATACAACACTTTCAGAATTTAGCACCAAGAACAAGTTACTTATCACTGGAACTCCTCTACAGAACAGTGTTGAAGAACTATGGGCTTTGCTGCACTTCCTTGATCCTGACAAGTTCAGTAGCAAGGATGATTTCGTACAGAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCTCACATACTGCGAAGAGTTATCAAAGATGTCGAGAAATCGTTACCCCCTAAAATTGAACGTATCCTTAGGGTTGAAATGTCTCCCCTTCAGAAACAGTATTATAAGTGGATTTTGGAGCGCAATTTTCATGATTTGAACAAAGGAGTTCGCGGGAATCAGGTTTCCCTTCTAAATATTGTAGTGGAATTAAAGAAATGCTGTAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGAAGTAGTGACAACAGTAAGCGAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTTGACAAGCTACTTGTCAGATTGCATGAAACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCAGGATGTTGGATATACTGGCAGAGTATATGTCGTTACGCGGGTTTCAATTTCAGAGACTTGATGGCAGTACAAAAGCTGAGCTTCGTCAGCAGGCAATGGATCACTTTAATGCACCTGGAAGTGAGGATTTTTGTTTCCTCCTTTCAACACGTGCAGGAGGTCTGGGTATCAACCTTGCAACTGCAGATACTGTCATTATATTTGATTCAGATTGGAACCCTCAAAATGATCTGCAGGCAATGAGTAGAGCTCATAGAATTGGCCAACAAGAAGTTGTGAACATATATAGATTTGTGACGAGCAAAAGTGTTGAGGAGGATATTTTGGAACGTGCCAAAAAGAAGATGGTTCTTGACCACTTGGTCATACAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCAAAAAAAGGAGGATGCTTTTTTGACAAAAATGAGCTATCCAAAATATTACGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGACGAAGAAAGCAAAAAACGACTCTTAAGTTTGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAACAAGGAAATGAGTTATTAAGTGCATTTAAGGTGGCCAATTTTTGTAATGATGAAGATGATGAAAGCTTTTGGAGTCGTTGGATTAAGCCCGATGCTATAGTCCAAGCAGAGGATGCTCTTGCTCCGCGTTCTGCAAGGAATATTAAAAGCTATGCAGAGGATAATCAATCTGAAAGAAGTAATAAAAGAAAAAAGAAGGATCCTGAACCACCTGAACGAGCTCAGAAACGCCGGAAAGCAGAGTACTCAGCTCCTGCAGTACCAATGATTGATGGAGCATCTGCCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTTCAGTTATGAAATATGGGAATGAGAGCCAAATTGACTTGATTGTTGCTGAGGTTGGTGGTGCACTTGGAGCTGCTTCACTTGAAGCACAGTGTGAACTCTTCAATGCTCTAATTGATGGCTGTACAGAGGCAGCAGAACTTGGCAGTCTGGATCCAAAGGGGCCTTTGCTGGATTTTTTCGGTGTCCCAGTGAAGGCGAATGATCTACTTGCCCGTGTCCAGCAACTTCAACTCCTAGCAAAGCGTATTAGTCGGTATGAAGATCCCATTCAACAGTTCCGTATTTTATCATACCTCAAGCCTTCAAACTGGTCGAAAGGTTGTGGATGGAACCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTTTCATGGATTTGGTAATTGGGAAAAGATTAGATTAGATGAACGGCTTGGTCTTAACAAAAAAATTGCACCAGCAGAACTCCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGATCGCGCAAATGCCCTTTTGGAGCAGGAACTTGCTGTTCTTGGTGTGAAAAATGCTAATACCAGGGCTGGACGGAAACCTTCCAAGAAAGAAAGAGAACATATGATGAACAACACGCCACTGTTGCGTGGGCAGGAGAAGAAGAAAATGGGTTCTGCTAAAGTCAATGTCCCAATGAGAAAGGATAGACCTCAGAGACCGCAGAAGGTTGAACCTATAGTAAAAGAGGAGGGCGAAATGTCAGATGATGAGGAAGTATATGAGCAGTTCAAGGAAGTAAAGTGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGGCTTCACAGGTTGCAGACAACCAGTGCAAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATACGTAACTATTTACAACAACTTGGGCGAAGGATAGATGAAATTGTCATTGATCATGAAGAAGAGCCATATAAGCAAGATAGAATGACTGTTCGGCTGTGGAAATATGTCTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAGCAACAAGATGAGGCAGGGGTTGGCCCCTCAAATGCCAATGGTTCAGCATCTCTTTCATTTGGCAGAAATGGAAACCCATTTGCTCACCAACTGGAGAGGCCAAGAAGATTAAAAAATGTTACAACCTACCAAATGCCAGAACCAGTTAATAGTACAGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGAGGACCATTTCCAGGGTCAGCCACCACCTCAAAGAACCATGAGCAACGGTATTCGTGTCACTGATCCTAGTGCACTTGGTATCCTTGGTGCTGGACCATCTGACAAACGTTTTGCCGGTGAGAAACCGTTTAGGGCACAACCTGGTGGGGGCTTTCCTTCAAGGCAAGGCTTCTCTTCAGAAGAGTTCGATCCAATTACAATCAATATGTTGGGGGAAAAAAAAAATCTCAAGATATATCAGGAGGAAGCGAAGCAAATTTTATACTGA 5280 0.4184 MAFFRNFLNDNVSHSVIEDKDQEQNADRVHRSVGNECVDATSGEKEFDMNMEAQYQSDGEPDGANGMQNEATTDDGVGERESNLETTGSKTAMVGEWGSTFFQDCRPMCPQDGSDSGQESKSGSEYRNEDVSEENSFDGRGDRLDSEDDEGQNEAGKAPRGQSVNSWPHRMSNNANSTGRRRSRIVDDGEDDDGDNDDDDGDADYEEEDEGDEDDPDDADFEPAAGGRAANKDKDWEGEGSDEDDDSDVNLDVSDDDDDDDDDDSYYAKKPKARQRGKVGRSIKSSRDRKTYASSGRQRRVKSFEDEESTADDSDSDSDEDFKSVKKRGAHVRKNNGRSSAASSLSLRNSEVRTSSRSVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMNHLFESEIDWSEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVNDVSKEMDLDIIKQNSQVERIISDRIIKDNGGNVIPEYLVKWQGLSYAEATWEKDTDIAFAQHAIDEYKAREAAMSVQGKTVDSQRKKSKLSLRKLEEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVVLKDKAVLSKIRWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFSSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKRERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGCFFDKNELSKILRFGAEELFKEERNDEESKKRLLSLDIDEILERAEKVEEKEAEGEQGNELLSAFKVANFCNDEDDESFWSRWIKPDAIVQAEDALAPRSARNIKSYAEDNQSERSNKRKKKDPEPPERAQKRRKAEYSAPAVPMIDGASAQVRNWSYGNLSKRDALRFSRSVMKYGNESQIDLIVAEVGGALGAASLEAQCELFNALIDGCTEAAELGSLDPKGPLLDFFGVPVKANDLLARVQQLQLLAKRISRYEDPIQQFRILSYLKPSNWSKGCGWNQIDDARLLLGIHFHGFGNWEKIRLDERLGLNKKIAPAELQHHETFLPRAPNLRDRANALLEQELAVLGVKNANTRAGRKPSKKEREHMMNNTPLLRGQEKKKMGSAKVNVPMRKDRPQRPQKVEPIVKEEGEMSDDEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQQLGRRIDEIVIDHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSNANGSASLSFGRNGNPFAHQLERPRRLKNVTTYQMPEPVNSTGKSEAWKRRRRAESEDHFQGQPPPQRTMSNGIRVTDPSALGILGAGPSDKRFAGEKPFRAQPGGGFPSRQGFSSEEFDPITINMLGEKKNLKIYQEEAKQILY 1759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g00449 1759 Pfam Domain of unknown function (DUF4208) 1508 1600 IPR025260 -
Adu07g00449 1759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 609 781 IPR014001 -
Adu07g00449 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 392 480 IPR000953 -
Adu07g00449 1759 CDD CD2_tandem 503 559 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 281 307 - -
Adu07g00449 1759 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1623 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 238 264 - -
Adu07g00449 1759 SMART DUF4208_2 1496 1601 IPR025260 -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 165 180 - -
Adu07g00449 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 1101 IPR027417 -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 122 155 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 1188 1216 - -
Adu07g00449 1759 CDD SF2_C_SNF 903 1038 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 1658 1673 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 1604 1688 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 1462 1483 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 82 96 - -
Adu07g00449 1759 SUPERFAMILY Chromo domain-like 484 560 IPR016197 -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 336 361 - -
Adu07g00449 1759 Coils Coil 1111 1131 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 1461 1483 - -
Adu07g00449 1759 Gene3D - 507 559 - -
Adu07g00449 1759 Pfam Helicase conserved C-terminal domain 914 1027 IPR001650 -
Adu07g00449 1759 SMART helicmild6 943 1027 IPR001650 -
Adu07g00449 1759 SMART chromo_7 503 562 IPR000953 -
Adu07g00449 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 818 IPR027417 -
Adu07g00449 1759 Gene3D - 378 504 - -
Adu07g00449 1759 Pfam SNF2-related domain 616 885 IPR000330 GO:0005524|GO:0140658
Adu07g00449 1759 SUPERFAMILY Chromo domain-like 389 472 IPR016197 -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 1181 1219 - -
Adu07g00449 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 505 569 IPR000953 -
Adu07g00449 1759 Pfam Chromo (CHRromatin Organisation MOdifier) domain 506 560 IPR023780 -
Adu07g00449 1759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 917 1068 IPR001650 -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 190 220 - -
Adu07g00449 1759 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 727 736 IPR002464 -
Adu07g00449 1759 Coils Coil 1057 1077 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 52 394 - -
Adu07g00449 1759 Gene3D - 588 827 IPR038718 -
Adu07g00449 1759 Gene3D - 1324 1434 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 1608 1628 - -
Adu07g00449 1759 SMART ultradead3 593 792 IPR014001 -
Adu07g00449 1759 CDD CD1_tandem 390 470 - -
Adu07g00449 1759 MobiDBLite consensus disorder prediction 362 394 - -
Adu07g00449 1759 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1623 - -
Adu07g00449 1759 Gene3D - 828 1058 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g00449 Adu-Chr7 4356293 4371088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g00449 619 1054 RAD5 or RAD16-like Gene Family AT1G02670 25.344 7.65e-34 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu07g00449 SNF2_N 2.4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g00449 K11367 - gmx:100792398 2766.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu07g00449 07 4356293 4371088 Adu07g00449 07 4356293 4371088 ECH