Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g00440 ATGAAGCTTTCTTCCTCTGGGTTTAATCAACCAGCTGAAGAAGAAGGGGAGAAGAAAACTTTGAATTCTGAACTATGGCATGCATGTGCTGGTCCTCTGGTTTCTCTACCACCGGTTGGAAGTCGTGTAGTATACTTTCCTCAAGGTCACAGCGAACAGGTAGCTGCTTCGACCAACAGGGAAGCAGATGCACATATTCCGAATTACCCTAACCTGCCGCCCCAGCTTATCTGTCAGCTCCACAATGTGACGATGCATGCTGATGCTGAAACAGATGAAGTATATGCTCAGATGACTCTGCAACCTCTAAGTCCACAAGAACAAAAGGATGTGTATCTACTTCCGGCCGAATTGGGTACTCCCAGCAAACAACCAACCAACTACTTCTGTAAGACATTAACTGCTAGTGATACCAGCACTCACGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTTCCTCCTCTTGACTACACACAGCAGCCTCCTGCTCAAGAACTGATTGCTAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCGAAAAGGCATCTTCTTACTACTGGGTGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCTGTCCTTTTCATATGGAATGAAAAAAATCAATTACTTTTGGGTATACGGAGAGCAAATCGTCCGCAGACTGTCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTCCTCGCTGCTGCAGCTCATGCAGCTGCCACAAACAGCCGTTTTACTATATTTTATAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCCTTGACCAAGTATGTTAAAGCAGTGTATCATACACGGGTATCTGTTGGTATGCGGTTTAGGATGCTCTTCGAGACAGAAGAGTCAAGTGTCCGTCGATATATGGGTACTATAACAGGCATTAGTGATTTAGATTCAGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGTTGGGATGAGTCTACTGCAGGAGATAGGCAACCAAGAGTCTCCTTGTGGGAGATTGAGCCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTGAGGTTGAGGCGTCCTTGGCCATCTGGACTACCTTCTTTATACGGTCTCAAGGATGGTGGTGACATGGGCATTAATTCTCCTTTCATGTGGCTCCAAAGTGGGCTTGGGGATCAAGGAATGCAATCATTGAACTTCCAGGGGCTCGGTGTTACACCGTGGTTGCAACCGAGATTTGATGCTTCCATGCCAGGACTCCAACCGGAGTTATACCAAGCAATGACTTCTGCTGCATTCCAGGAAATGAGGACGATGGATCCTTCAAAACCTTCATCCCAATCTCTGTTGCAGTTTCAGCAGCCTTCAAATGTTCCTTCTGCTTTTGCATCTGAGTTACAGAGACAAGTGTTACCACAGTCTCAGCCCCAAAACACTCTTCTACAAAATTTTCAAGAACATCAAACTCCTGCACCGTCACAGATTTCACCACAGCAGTTGCTTCGTTACCACCCATATAGCGATCAGCGGCAACAGCAGCAGCAACTAAAAACTGTGCCTGTTCAGCAGCAGTTACAGAATTTAGTCTCTCCTTTGTCTAATTTTGCAGCAGCTACACAACCTCAATCTCCATCCTTGCAAGCCCTTGCTTCACATTGCCAGCAGCAGAGCTTTCCCGAGCCAATCAGGAATCATGTTTCAAGCTCTGATGTTTCCCCTATGCAAAGTCTACTAGGCTCATTCTCTCAGGATGGAGCATCACAGTTACTTAACCGGAACGGACCGAACTCTGTCTTGTCTTCTGGAGCCTTACTACCGAAGCAAATAACCGTTGAATCTCAGGTACCATCAGCTGGTGCTCAGTGTGTATTGCCTCAGGTGGAAAATTTGGGAACATCACAATCAAATGTGTCCGAACTTACCGCTTTGCCTCCGTTTCCTGGAAGAGAACATTCTGCATATCAAGGTGCAGCTGATCCTCATAGCAATCTTTTGTTTGGGATAAACATAGATCCTTCTTCTCTTATGCTGCAAAATGGCATGCAAAACCTTAGAAATCTAGGCAACGTGAATGATTCATTGTCAATGACTTTTTCTGCTCCAAATTGTGGTGGTGCTAATGCTCCTGGCTCCGATTTCCCCCTAAGTTCAAACGTAACAACTTCAAGTTGTGTCGATGAATCGGGATTCTTGCAGTCTTCCGAAAATGTAGACCAATCCAATACTCCAACTAGAACCTTTGTCAAGGTTCACAAGTCAAGGTCCTTAGGCAGGTCACTGGACATTTCGAAGTTCAGCAGCTATGACGAGCTGCGCAGTGAACTTGCTCGGTTATTTGGCCTCGAAGGCCAACTAGAGGATCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACATTCTCCTTCTTGGTGATGATCCCTGGCAGGAGTTTGTGAACAGTGTATGGTCCATTAAGATACTATCTCCACTTGAAGTTCAACAAATGGGGAAAGGTGTTGTTCCTTCTACTTCTGCCCCTTCAGCTCAAAAGCTTTCTTCTACTGCTACTACCAATTCTTGTGACAATAATTATGGTGTTGGTAAACAAGAGTTGAGAAGTTCCAGCAATGTCCATGTGCATAGAACAATATTGTTTTCCGTCAAAATCGCATCTTTCCCACTCTGCACCACCACCACCACTACTACACTTGGAGCAAAAAAGGATCAATTTTGGGATAGTGCAGAAGAAGAGAGTAGTGACAATGAATGGGAGAGGTTACTCAAACCGTTTGGCCTCAAACAGCTTCGTAGTTCACTTTCCCCAATTAGCCCTTCCCAGCTTTGCAAATTGCTTTTGCTTCCACTTGACATTCCAACTACAATGGAGTTGTTTGAAAAAGCTGGTTCACAAAATGGTTATTCCCACTCCTTTGATGTGTACTGCATTTTGATTGATAAACTTGGTTCTAATGGGGACTTCAAAACTATAGATTTGTTGTTGAAGCAAATGAAGGAAGAGGGTATTGTGTTTAAGGAATCAATCTTTATCATGATCATGAGGTATTATGGGAAAGCTGGGTTGCCGGGCCAGGCGACTCGACTTTTGTTGGATATGTGGGGTGTTTATGATTGTGAACCTAGTTTTAAGTCCTACAATGTTGTGCTGGAGATTCTGGTTGCCGGGAATTGTCCTAAGGTAGCGCCGAATGTGTTTTATGACATGCTGAATAGGGGTGTTTCACCAACTGTTTCTACATTTGGGGTGGTGATGAAGGCATTGTGTATGATTAATGAGGTTGATTCAGCTTGCTCACTTCTAAAGGACATGATGAAGCATGGTTGTGTTCCGAATTCGATCATCTACCAGACTCTAATTCATACTCTTTCGCAGAATAATAGAGTGAACGACGCGATGAAGCTCTTGGAGGAAATGTTTCTGATGGGTTGCGAACCTGATGTGCAGACTTTCAATGATGTTATTTATGGACTCTGCCGGGCCAGCAGGATTCATGAGGCAGCAAAGTTGCTTGATCGAATGCTGCTTCGCGGTTTCAGTGCAGATGAAATGACTTATGGCTTTTTGATTAATGGATTGTGCAGGACGGGACACGTTGATGAAGCAAGGGCCTTGCTGAATAAAATTCCTAACCTGAATGCTGTTCACTATAATACATTAATAAATGGCTATGTTGCTAGGGGACGGTTTGACGAAGCAAAGGATCTTTTGTACAATAACATGGTAATTTCAGGCTACAAACCCGATGGCTTCACATTTAATATAATGATTGATGGGTTTTGCAAGAAGGGGCGCCTGGTCTCGGCTCTTGAATTCTTACATGAGATGGTAACAAAAGGTTTTGAGCCCTGCGTGGTCACATACACTATATTGATAAATGGCTTCTGCAAGCAAGGTCGATTAGATGAAGCTGCGGAAGTCGTGAATGCCATGTGGGCTAAAGGTCTCAGTTTAAACACAGTGGGATACAATTGCCTGATAAGTGCTCTGTGTAAAGATGGGAGGACTGAAGAAGCTCTACAATTGTTTGGTGAGATGTCAAGCAAGGGATGTAAACCTGACATTTATACATTTAATTCTTTAATATTTGGAATGTGCAACGATGACAATATGGAAGAGGCTCTGCGCTTGTATCGTGACATGTTCATGGAGGGTGTTATTGCCAACACTGTGACATACAACACATTGATTCATGCATTTATTAGGAGAGGCTCAATTCAACAAGCATTTAAGCTCGTTGATGAGATGATATTTCGAGGGTGCCCTCTCGACAATATTACATATATGACACTTATTAAAGCTCTATGTATGGCCGGGGCAGTAGAAAAAGGATTGGCATTGTTTGAAGAAATGCTTGGGAAAGGGATATTTCCTGATACCAACTGTTGCAATATTCTGATCAATGCCTTTTGTAGAATCGGAAAGGTTACAAGCCGAAGGAATGCGTCCCGATGCTATCACGTGTGGATAACGGGTTCGTGCCCAATGAAATCACTTGATTATACTGGTTGTCCATTTGAATCAATTGATTTTTCTCCTGTGAAACTAGAATCTCAACAATATTTTTCTGTTCAGCACCAGTTCTCAATCTCCAATTGTACAGATCTTATGTATAAAGCAAGAGGGACATGGATGCTGAAGAGGGGGTGA 4713 0.4373 MKLSSSGFNQPAEEEGEKKTLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREADAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKDVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGGDMGINSPFMWLQSGLGDQGMQSLNFQGLGVTPWLQPRFDASMPGLQPELYQAMTSAAFQEMRTMDPSKPSSQSLLQFQQPSNVPSAFASELQRQVLPQSQPQNTLLQNFQEHQTPAPSQISPQQLLRYHPYSDQRQQQQQLKTVPVQQQLQNLVSPLSNFAAATQPQSPSLQALASHCQQQSFPEPIRNHVSSSDVSPMQSLLGSFSQDGASQLLNRNGPNSVLSSGALLPKQITVESQVPSAGAQCVLPQVENLGTSQSNVSELTALPPFPGREHSAYQGAADPHSNLLFGINIDPSSLMLQNGMQNLRNLGNVNDSLSMTFSAPNCGGANAPGSDFPLSSNVTTSSCVDESGFLQSSENVDQSNTPTRTFVKVHKSRSLGRSLDISKFSSYDELRSELARLFGLEGQLEDPQRSGWQLVFVDRENDILLLGDDPWQEFVNSVWSIKILSPLEVQQMGKGVVPSTSAPSAQKLSSTATTNSCDNNYGVGKQELRSSSNVHVHRTILFSVKIASFPLCTTTTTTTLGAKKDQFWDSAEEESSDNEWERLLKPFGLKQLRSSLSPISPSQLCKLLLLPLDIPTTMELFEKAGSQNGYSHSFDVYCILIDKLGSNGDFKTIDLLLKQMKEEGIVFKESIFIMIMRYYGKAGLPGQATRLLLDMWGVYDCEPSFKSYNVVLEILVAGNCPKVAPNVFYDMLNRGVSPTVSTFGVVMKALCMINEVDSACSLLKDMMKHGCVPNSIIYQTLIHTLSQNNRVNDAMKLLEEMFLMGCEPDVQTFNDVIYGLCRASRIHEAAKLLDRMLLRGFSADEMTYGFLINGLCRTGHVDEARALLNKIPNLNAVHYNTLINGYVARGRFDEAKDLLYNNMVISGYKPDGFTFNIMIDGFCKKGRLVSALEFLHEMVTKGFEPCVVTYTILINGFCKQGRLDEAAEVVNAMWAKGLSLNTVGYNCLISALCKDGRTEEALQLFGEMSSKGCKPDIYTFNSLIFGMCNDDNMEEALRLYRDMFMEGVIANTVTYNTLIHAFIRRGSIQQAFKLVDEMIFRGCPLDNITYMTLIKALCMAGAVEKGLALFEEMLGKGIFPDTNCCNILINAFCRIGKVTSRRNASRCYHVWITGSCPMKSLDYTGCPFESIDFSPVKLESQQYFSVQHQFSISNCTDLMYKARGTWMLKRG 1570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g00440 1570 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Adu07g00440 1570 Gene3D Tetratricopeptide repeat domain 1090 1232 IPR011990 GO:0005515
Adu07g00440 1570 Gene3D - 759 852 - -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1272 1304 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1412 1445 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1447 1481 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1136 1169 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1206 1229 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 995 1025 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1237 1270 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1377 1410 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1171 1204 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1307 1340 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1101 1134 IPR002885 -
Adu07g00440 1570 TIGRFAM PPR: pentatricopeptide repeat domain 1344 1376 IPR002885 -
Adu07g00440 1570 Pfam PPR repeat family 1340 1388 IPR002885 -
Adu07g00440 1570 Pfam PPR repeat family 1065 1110 IPR002885 -
Adu07g00440 1570 Pfam PPR repeat family 1272 1318 IPR002885 -
Adu07g00440 1570 Pfam PPR repeat family 1132 1181 IPR002885 -
Adu07g00440 1570 Pfam PPR repeat family 1410 1457 IPR002885 -
Adu07g00440 1570 Gene3D - 127 230 IPR015300 -
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1098 1132 IPR002885 -
Adu07g00440 1570 CDD B3_DNA 128 229 IPR003340 GO:0003677
Adu07g00440 1570 Gene3D Tetratricopeptide repeat domain 1301 1390 IPR011990 GO:0005515
Adu07g00440 1570 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Adu07g00440 1570 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 872 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1234 1269 IPR002885 -
Adu07g00440 1570 SMART B3_2 129 231 IPR003340 GO:0003677
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1203 1233 IPR002885 -
Adu07g00440 1570 Gene3D Tetratricopeptide repeat domain 932 1089 IPR011990 GO:0005515
Adu07g00440 1570 Gene3D Tetratricopeptide repeat domain 1233 1300 IPR011990 GO:0005515
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1445 1479 IPR002885 -
Adu07g00440 1570 Pfam AUX/IAA family 753 845 IPR033389 -
Adu07g00440 1570 ProSiteProfiles PB1 domain profile. 763 847 IPR000270 GO:0005515
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1305 1339 IPR002885 -
Adu07g00440 1570 PANTHER AUXIN RESPONSE FACTOR 6 1 872 - -
Adu07g00440 1570 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1410 1444 IPR002885 -
Adu07g00440 1570 Pfam PPR repeat 1198 1229 IPR002885 -
Adu07g00440 1570 Gene3D - 293 365 - -
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1133 1167 IPR002885 -
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1375 1409 IPR002885 -
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1340 1374 IPR002885 -
Adu07g00440 1570 Gene3D Tetratricopeptide repeat domain 1391 1511 IPR011990 GO:0005515
Adu07g00440 1570 SUPERFAMILY CAD & PB1 domains 754 841 - -
Adu07g00440 1570 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1168 1202 IPR002885 -
Adu07g00440 1570 Pfam PPR repeat 1236 1258 IPR002885 -
Adu07g00440 1570 Pfam PPR repeat 995 1024 IPR002885 -
Adu07g00440 1570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1270 1304 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g00440 Adu-Chr7 4271702 4281541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g00440 98 852 B3 DNA Binding Superfamily AT5G37020 54.145 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Adu07g00440 AUX_IAA 2.9e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g00440 - - gmx:100810798 1531.15