Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g00380 ATGGAACTTCCAAATCAAGCACCGGAAGAAGGATCCTCACAACATCATCAGAAGAAGATGGGAAGAGGCAAGATTGAGATCAAGAGGATTGAAAACACTACCAACCGCCAAGTCACGTTCTGTAAGCGCCGCAACGGCTTGCTCAAGAAAGCTTATGAGCTCTCCGTCCTCTGTGACGCCGAGGTCGCCCTCGTCGTCTTCTCCAGCCGCGGCCGCCTCTACGAGTACGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTATAAGAAAGCAAGTGCTGCTTCCTCAAACACAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAATCGTCCAAACTAAGAAGACAGATTCGTGATATTCAAAATCTAAATAGGCACATCCTTGGTGAAGCTCTTAGCTCCCTGAGCCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTCGATCTAGAAAGCATGAAACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCACAGCAGCAACAACAACAGGAACAAGAGCAGCAGAATTTGATGCATGGGAACATGTGTGAAGATCAGTCCACCATAGCGTCACAAACATATGACAGGAATTTCTTCCCAGTAAATCTCTTAGATTCCAATAATCATCAATATTCACGCCAAGATCACACTGCACTCCAGCTTGTCTGA 765 0.4471 MELPNQAPEEGSSQHHQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKASAASSNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQEQEQQNLMHGNMCEDQSTIASQTYDRNFFPVNLLDSNNHQYSRQDHTALQLV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g00380 254 CDD MADS_MEF2_like 21 97 IPR033896 GO:0000977|GO:0045944
Adu07g00380 254 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu07g00380 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 245 - -
Adu07g00380 254 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Adu07g00380 254 Gene3D - 32 112 IPR036879 GO:0003677|GO:0046983
Adu07g00380 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Adu07g00380 254 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Adu07g00380 254 MobiDBLite consensus disorder prediction 12 27 - -
Adu07g00380 254 SUPERFAMILY SRF-like 21 98 IPR036879 GO:0003677|GO:0046983
Adu07g00380 254 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Adu07g00380 254 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Adu07g00380 254 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Adu07g00380 254 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Adu07g00380 254 Coils Coil 140 160 - -
Adu07g00380 254 MobiDBLite consensus disorder prediction 1 27 - -
Adu07g00380 254 Coils Coil 179 208 - -
Adu07g00380 254 Coils Coil 109 129 - -
Adu07g00380 254 Pfam K-box region 104 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu07g00380 254 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 16 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g00380 Adu-Chr7 3608403 3615001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g00380 9 254 MADS-box Gene Family AT3G58780 69.048 1.09e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu07g00380 K-box 7.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g00380 K09264 - gmx:100792224 393.275