Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu07g00033 ATGGCATCGGCTCCCGCCGTTGCCGGAAACTCCGACAGCTTAGTGGCGGCGATCCGGGCGATTCAGGGAGACACCTCACTCACTGACGAGGAGAAGGCAAAGAAGAGACAGGAGCTCGTTTCTCGCTCCTCGAAGCCACTCGCAGCAGCGGAGAATGGCAAAGCAGAGAAGGACATCTTCGATGGGAGTCTGAACTGCTCAATCTGCATGCAGTTGCCGGAGAGACCCGTCACGACGCCGTGTGGTCACAACTTTTGTTTGAAGTGCTTCCAGAAGTGGATTGGGCAGGCAAAGCGGACCTGTGCGAACTGTCGCAGTCAGATCCCACCTAAGATGGCCGAAAACCCTCGGATTAATGACCAGCTGGCCATTGCGATCCGTTTGGCGAGGCAAATGAAGGCCACGGGGATGGTGGGTGCGGTAGCGCAGCCCAAGGTGTATGTTTCTCGAAAAAACGACGAGCTTCCAGACACTTGCTTCACCACTGAGCGGGCGAAGAAGACTGGCAAGGCCAACGCGTGCAGTGGTAAGATTTTTGTGACGATCCCTTCGGATTTTTTGGGTCCAATCACTGCTGAGTATGATCCCAGGAACAATCGTGGGGTTCTTGTTGGGGATACTTGGGAAGACAGAATGGATTGCAGGCAGTGGGGCGCCCATTTCCCTCATGTTGCGGGCATTGCTGGTCAAAAGGGTTTTGGTGCTCAGTCTGTAGCTCTTTCAGGTGGCTATGTTGATGACGAGGATCATGGAGAGTGGTTCCTCTACACTGGAAGTGGTGGAAAGGACCTTAGTGGCAACAAACGCACTAACAAAACACATTCATTTGACCAGAAGTTTGACAACATGAATGAGGCCCTCAGAGTGAGTTGCCAACAAGGTTATCCTGTTAGGGTTGTGAGGTCCCACAAGGAAAAACGATCTGCTTATGCACCCCAATTCGGAGTGAGGTATGATGGAGTTTATCGAATAGAGAAATGCTGGCGTAAGAAGGGAATACAAGGTTGCTTGGTTTGCAGATATTTGTTTGTTAGATGTGACAATGAACCAGCTCCATGGACAAGTGATGAACATGGAGACCGTCCACGCCCACTTCCAGTGGTTAAAGAGTTGAAGGGGGCAATTGATGTAACTGAAAGGAAGAAAGCTGCAGCATGGGATTATGATGAGGAAAAGGAATGCTGGATGTGGAAGAGACCCCCACCACCAAGCAAGAAAATGGATGCTATAAGGTGTGAAAATGGGATATCAGAAAAGATAAAAATTGTACGAAAAGTCAAGACCAAGCCAGTGAGAGATAGGCTTATGAAAGAGTTTGCTTGCCTCTTGTGTCGCAAGGTGTTGAGCGTCCCTGTGACAACTCCTTGTGGCCACAACTTCTGCAAATCCTGTTTGGAGGGTGCCTTTTCTGGCAAAAGTTTTATCAGAAAGAGGGGAAGCGAAGGTGGGCGCACCTTGCGAGCACAGAAGAATGTTATGAAATGCCCTTCATGTTCAATTGACATAGCTGAATTTCTTCAGAACCCAGAGGTTAACAGACACATGATGAGTGCGATAGAAGCCCTCCTCCGCGAGGCTGAGATGGAAGAGAGTTCTGAAGTGTCCAATGACAAAAATGATGAAAATATAGAGACTGTGAATGATGATGATGGTACAGAAGTTTCAAAGCCTTGTGATTCAGGTGAGAATGTCCTAGAGGAGATCAAGGACAATGATTTGAATCAGCCACACAAGCGCAGAAAGGGTGCTGGTGATTCAGCTATTGTGAACACTGAGGAGCAAATCAATGTGGCAGGACTAGAGGACAATGTAATGACTTGCAGCACTTAA 1830 0.488 MASAPAVAGNSDSLVAAIRAIQGDTSLTDEEKAKKRQELVSRSSKPLAAAENGKAEKDIFDGSLNCSICMQLPERPVTTPCGHNFCLKCFQKWIGQAKRTCANCRSQIPPKMAENPRINDQLAIAIRLARQMKATGMVGAVAQPKVYVSRKNDELPDTCFTTERAKKTGKANACSGKIFVTIPSDFLGPITAEYDPRNNRGVLVGDTWEDRMDCRQWGAHFPHVAGIAGQKGFGAQSVALSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKTHSFDQKFDNMNEALRVSCQQGYPVRVVRSHKEKRSAYAPQFGVRYDGVYRIEKCWRKKGIQGCLVCRYLFVRCDNEPAPWTSDEHGDRPRPLPVVKELKGAIDVTERKKAAAWDYDEEKECWMWKRPPPPSKKMDAIRCENGISEKIKIVRKVKTKPVRDRLMKEFACLLCRKVLSVPVTTPCGHNFCKSCLEGAFSGKSFIRKRGSEGGRTLRAQKNVMKCPSCSIDIAEFLQNPEVNRHMMSAIEALLREAEMEESSEVSNDKNDENIETVNDDDGTEVSKPCDSGENVLEEIKDNDLNQPHKRRKGAGDSAIVNTEEQINVAGLEDNVMTCST 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu07g00033 609 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 6 587 - -
Adu07g00033 609 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 587 IPR045134 -
Adu07g00033 609 SMART ring_2 441 498 IPR001841 -
Adu07g00033 609 SMART ring_2 66 104 IPR001841 -
Adu07g00033 609 SUPERFAMILY PUA domain-like 171 365 IPR015947 -
Adu07g00033 609 SUPERFAMILY RING/U-box 60 113 - -
Adu07g00033 609 SMART G9a_1 192 349 IPR003105 -
Adu07g00033 609 Pfam Zinc finger, C3HC4 type (RING finger) 64 108 - -
Adu07g00033 609 ProSiteProfiles Zinc finger RING-type profile. 66 105 IPR001841 -
Adu07g00033 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 549 IPR013083 -
Adu07g00033 609 ProSiteProfiles YDG domain profile. 197 345 IPR003105 -
Adu07g00033 609 MobiDBLite consensus disorder prediction 529 560 - -
Adu07g00033 609 ProSiteProfiles Zinc finger RING-type profile. 441 499 IPR001841 -
Adu07g00033 609 Pfam SAD/SRA domain 199 348 IPR003105 -
Adu07g00033 609 Gene3D - 168 367 IPR036987 -
Adu07g00033 609 ProSitePatterns Zinc finger RING-type signature. 456 465 IPR017907 -
Adu07g00033 609 SUPERFAMILY RING/U-box 434 525 - -
Adu07g00033 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 131 IPR013083 -
Adu07g00033 609 CDD RING-HC 66 104 - -
Adu07g00033 609 Pfam RING-type zinc-finger 441 496 IPR027370 -
Adu07g00033 609 MobiDBLite consensus disorder prediction 567 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu07g00033 Adu-Chr7 382538 387148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu07g00033 14 532 C2H2 Transcription Factor Family AT5G39550 61.686 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu07g00033 K10638 - gmx:100786796 863.603