Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03255 ATGACGGAGGCCATGCCGCTGTTGGATCCACATAACGGTTTCCATCGCAAAACGGTGTTGCAACCGCTCCTTTGCCGGCGGCGGCGGTGGGTCCTGCGAATGCGAGTTGACCACTCGCCGATTGCTCGCTTACAGCTAGGTGAAGGGTTATTTTATGTGAAGCAGGTGCTTAGAACAGGATGCCTCCCAAGTTTTGGTATTTGTTGTTGCCTTGGTCTGATCTTTGATGTTTTTGTTTTGAATTGCTGGATGTCTTCCTGCCTCCTACTTGGAGTCTTGGAGAAAGAGTTCTGGAAAGAAATTGCTTGCAAAAAAATGGAAACAGTTCAATATGCATGTGATGTTGATGCAGTACCTTCTCATCTCCTTCTGATCAGCTTGGTAGCAGGAGTAACTGAACCCATGTTGTACATTAGAATGCTGTTTAGTATGTTTGCTTGGAATGTTGAGGATCATTATTTGTACAGGTCATGCAGCATTGGACTTTCAAAGGGTGGTGAGAGAACATGTGTATATACTAATAATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTTTCTTGGGGAAAACAACTCTATTTTCGCCAAATAGTGTGCTGGAACATGAAGTCCTCGTTTACAAGGCTGTTCAAAAGCTAAGGGAGTTTGTGATTACCTTTGCTAAGGCAGACCATGCTGGATTCAGTCATGGTTTCAACGGCGGAGAAGCTATGAACTTTGCAATTAGTGATTGGTTTCCTTTAAGAGCTATTGCTAGTCGGATATATGCACTGCTTAATAGGATTCCTTTGCTTCACCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTGTATGCATCCATGGAGCTTGAAGCTTCACATACCAGCATCCTATTAAGGAACTCTTTGCCTACTGCACTATGA 912 0.4342 MTEAMPLLDPHNGFHRKTVLQPLLCRRRRWVLRMRVDHSPIARLQLGEGLFYVKQVLRTGCLPSFGICCCLGLIFDVFVLNCWMSSCLLLGVLEKEFWKEIACKKMETVQYACDVDAVPSHLLLISLVAGVTEPMLYIRMLFSMFAWNVEDHYLYRSCSIGLSKGGERTCVYTNNILSSDGEDGAFDVFLGKTTLFSPNSVLEHEVLVYKAVQKLREFVITFAKADHAGFSHGFNGGEAMNFAISDWFPLRAIASRIYALLNRIPLLHHEELLCKEAMLLYASMELEASHTSILLRNSLPTAL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03255 303 ProSiteProfiles JmjC domain profile. 107 259 IPR003347 -
Adu06g03255 303 PANTHER LYSINE-SPECIFIC DEMETHYLASE 168 291 - -
Adu06g03255 303 PANTHER LYSINE-SPECIFIC DEMETHYLASE 123 155 - -
Adu06g03255 303 PANTHER LYSINE-SPECIFIC DEMETHYLASE 78 117 - -
Adu06g03255 303 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 168 291 - -
Adu06g03255 303 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 123 155 - -
Adu06g03255 303 SMART cupin_9 107 259 IPR003347 -
Adu06g03255 303 Pfam JmjC domain, hydroxylase 135 242 IPR003347 -
Adu06g03255 303 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 78 117 - -
Adu06g03255 303 SUPERFAMILY Clavaminate synthase-like 129 275 - -
Adu06g03255 303 Gene3D Cupin 117 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03255 Adu-Chr6 110966395 110971278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g03255 128 273 C2H2 Transcription Factor Family AT5G04240 38.509 2.64e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Adu06g03255 JmjC 1.3e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g03255 - - vvi:100266131 259.996