Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu06g03249 | ATGGGTTGGCTTAGCAAATTTTTTAAAGGCTCCGACCAAAAGATTTCGGAAGGGCATTACCATTCATATTATAACGGGGATGCGAATTCTTACTTGCCGTCGACGTCTGGTGTAACAAATGATGTTTGGCCTGAGAATGAGAAAGAAGATATAGATCATGCCATTGCATTATCTCTGGCAGAGCAAAATCATAGAGGAAACCATGTAAATGACTACAGATCTCAATTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATCTAGAGTCTCCTCCCAAATATGGAAACGAAAACATTTTTTTGTATAAGAGGATTTGTGCCAGCTGCCATAATGAGATTGGTTATGGACGATACCTAAATTGTTTGAATGCTTTCTGGCATACTGAATGCTTCCGCTGTCATGCTTGCAACCTACCGATCTCTGATTATGAGTTCTCCACGTCGGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGACGTTTGCAAGCATTTCATGAGTACAAATTTTATGTTCTTGTTTACTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAAAAATATTGCCCTTCTCATGAACACGATAACACTCCAAGATGTTGCAGCTGTGAGCGAATGGAGCTACAAGAGGCTGGATATATCAGTCTTAATGATGGCCGGAAGCTTTGCTTAGAGTGCCTCGACTCTGCTATCATGGATACAAGCGAATGCCAACCGCTTTATGCCGGTATACAAAGATTTTATGAAAGCTTAGACATGAAATTGGAGCAGCAAATTCCACTGTTCTTGGTTGAAAGACAAGCCCTGAACGAAGCAAGAGAGGGGGAGAAGCATGTAATGACGTTTCCTTCTCTCTCGCCCGTGCTATTAAATGATACATTGCATTTGAACTTTAATCAGATCTCGAGACGACCGAGACTTGGGGCAGGAAATAGAGCGGTCGACATGAGAACACAACCATACAAATTGACCAGACGCTGTGATGTGACGGCAATTCTCATTTTATTCGGACTTCCAAGATTGCTTACTGGATCGATCCTAGCTCATGAGATGATGCATGCTTGGCTGGCTTAA | 1131 | 0.4173 | MGWLSKFFKGSDQKISEGHYHSYYNGDANSYLPSTSGVTNDVWPENEKEDIDHAIALSLAEQNHRGNHVNDYRSQLEEDEQLARAIEESLNLESPPKYGNENIFLYKRICASCHNEIGYGRYLNCLNAFWHTECFRCHACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFMSTNFMFLFTIPTNPAGLIEYRAHPFWVQKYCPSHEHDNTPRCCSCERMELQEAGYISLNDGRKLCLECLDSAIMDTSECQPLYAGIQRFYESLDMKLEQQIPLFLVERQALNEAREGEKHVMTFPSLSPVLLNDTLHLNFNQISRRPRLGAGNRAVDMRTQPYKLTRRCDVTAILILFGLPRLLTGSILAHEMMHAWLA | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu06g03249 | 376 | Coils | Coil | 69 | 89 | - | - | |
| Adu06g03249 | 376 | Pfam | LIM domain | 110 | 164 | IPR001781 | - | |
| Adu06g03249 | 376 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 183 | - | - | |
| Adu06g03249 | 376 | ProSitePatterns | LIM zinc-binding domain signature. | 110 | 144 | IPR001781 | - | |
| Adu06g03249 | 376 | PANTHER | PROTEIN DA1-LIKE | 1 | 375 | - | - | |
| Adu06g03249 | 376 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 106 | 135 | - | - | |
| Adu06g03249 | 376 | CDD | LIM_DA1 | 110 | 162 | - | - | |
| Adu06g03249 | 376 | Pfam | Protein DA1 | 270 | 375 | IPR022087 | - | |
| Adu06g03249 | 376 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
| Adu06g03249 | 376 | PANTHER | PROTEIN DA1-RELATED 2 | 1 | 375 | IPR045218 | - | |
| Adu06g03249 | 376 | ProSiteProfiles | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | IPR003903 | - | |
| Adu06g03249 | 376 | Gene3D | Cysteine Rich Protein | 104 | 182 | - | - | |
| Adu06g03249 | 376 | SMART | uim | 46 | 65 | IPR003903 | - | |
| Adu06g03249 | 376 | SMART | uim | 77 | 96 | IPR003903 | - | |
| Adu06g03249 | 376 | SMART | lim_4 | 109 | 161 | IPR001781 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu06g03249 | Adu-Chr6 | 110889509 | 110894228 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Adu06g03249 | DA1-like | 1.7e-35 | CL0126 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu06g03249 | - | - | lja:Lj5g3v0083000.1 | 579.326 |