Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03178 ATGGGTGGCTGCAATGGTGGAAGCTTCCCTTGTGACTCATCAGAAGACTTCTCAGCTTTGTTCAACCAACTCCTCTCTCCGCCACCACAGCCCAATTTGACCATAACAAACCGGGTTCTTGGCCCTTCTTCTTCTTCTGCTGTTTCTTCATCTGCTTTCCGTTTCTCTTCTTCTTCTCTTCATGATGATGATGATGATGATGATGAAGATGATCCCTTTCTTGATCACAATCCCAGTAACAATAACAACAACAACAATAATAATAATAATAATTGTAATGACGATTATATCCCTGCACCTCTTCATGACTCTGATGATGCTAACAACAACACTAGGCCAAATCATCATCCAATTGAGAACGGTGAGACTTCTGAATTGCCATCAAGGCATGCCCCACCACCACGTACTTCTTCAAAGAGGAGCAGAGCTGCAGAATTTCATAATTTATCTGAAAAGAGAAGAAGGAGTAGGATTAATGAGAAGATGAAGGCTTTACAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCTATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAGATGTTAATGATGAGAAATGGTTTGAGCTTACATCCAATGTCACTACCAGGAGGATTGAGACCTATGATCCTGCCACATACTGGTGTGGATTTTGATGAAGGTAACAGATTTCAGAACTCTATCAATGGTGGGGCTTCATCATCATATACAGCCGATGAAAGCTTGGTGGCGCGGTCGCCTTTTGGTTTTCACAGACCATGCAGCATCTCAAACCAATCTGCTGCTATGCCATCATTGACAAATCTAGCTACTTCAGATAACTCATCAAGCTTTCAATCCTCTATCAAGGATGGACACATGCCATAA 894 0.4128 MGGCNGGSFPCDSSEDFSALFNQLLSPPPQPNLTITNRVLGPSSSSAVSSSAFRFSSSSLHDDDDDDDEDDPFLDHNPSNNNNNNNNNNNNCNDDYIPAPLHDSDDANNNTRPNHHPIENGETSELPSRHAPPPRTSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMILPHTGVDFDEGNRFQNSINGGASSSYTADESLVARSPFGFHRPCSISNQSAAMPSLTNLATSDNSSSFQSSIKDGHMP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03178 297 SMART finulus 148 197 IPR011598 GO:0046983
Adu06g03178 297 MobiDBLite consensus disorder prediction 140 154 - -
Adu06g03178 297 MobiDBLite consensus disorder prediction 277 297 - -
Adu06g03178 297 MobiDBLite consensus disorder prediction 22 57 - -
Adu06g03178 297 MobiDBLite consensus disorder prediction 76 95 - -
Adu06g03178 297 Pfam Helix-loop-helix DNA-binding domain 146 192 IPR011598 GO:0046983
Adu06g03178 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 202 IPR036638 GO:0046983
Adu06g03178 297 MobiDBLite consensus disorder prediction 108 123 - -
Adu06g03178 297 Gene3D - 137 201 IPR036638 GO:0046983
Adu06g03178 297 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 46 295 IPR031066 -
Adu06g03178 297 MobiDBLite consensus disorder prediction 22 154 - -
Adu06g03178 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Adu06g03178 297 PANTHER TRANSCRIPTION FACTOR SPATULA 46 295 - -
Adu06g03178 297 CDD bHLH_AtPIF_like 142 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03178 Adu-Chr6 110040902 110044084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g03178 142 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 51.176 1.03e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu06g03178 HLH 3.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g03178 - - gmx:100785332 239.58