Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03173 ATGGCGCAGATTCAGGTGCAGCACCAGAGCGCGGTTTCGGCTCCACCGCAGAACGGCGTCGCAGCCGCTCCTTCGCCGCCACTGCCGGTGGGTGCTGCGAATGGGACGAACCAGTTTGTTACGACGTCGTTGTACGTCGGGGATCTAGACCCTGAGGTTGACGAGAGGCACCTCTACGATTTGTTCAACCAGGTCGGGCAAGTGGTCTCGGTTCGTGTCTGCAGTGATTTGACCACTCGCCGATCGCTCGGTTACGGTTACGTTAATTACAGTAACCCTCAGGATGCTGCACGAGCAATAGATGTACTGAATTTCACTCCACTGAACAACAAGCCCATTAGGATCATGTATTCTTATCGGGATCCTAGCATTCGCAAGAGTGGGACTGGAAACATTTTTATCAAGAATTTGGATAAAGCAATTGATCACAAAGCTTTACATGATACTTTTTCTTCTTTTGGACATATTCTTTCTTGCAAAATAGCGACTGATGCTTCTGGCCAGTCAAAAGGCTATGGTTTTGTTCAATTCGACACCGAGGAGTCTGCACAGAATGCAATCGATAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTACGTGGGTCATTTCTTACGTAAGCAAGATAGAGATAATGCTTTGGGTAAGACGACATTCAATAATGTGTATGTGAAAAACCTGTCTGAGTCGGTGACAGATGATGACTTGAAGAAAATTTTTGGAGAGTATGGGACGATCACTAGTGCTGTAGTAATGAGAGATGCATATGGTAGATCAAAGTGTTTTGGGTTTGTTAATTTTGAAAACCCAGAAGATGCTGCCAAAGCTGTTGAGTCACTCAATGGAAAGAAAATTGATGACAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGAGAGAATGAGCTGAGAAGACGGTTTGAGCAAACTGTTAAAGAATCTGTTGATAAATACCAAGGTGTGAACTTGTATCTCAAGAACTTGGATGATACCATCAATGATGAAAAGCTAAGAGAACTCTTCTCTGAGTTTGGTTCAATAACCTCTTGCAAGGTTATGCGCGATCCAAATGGAATCAGTAGAGGATCAGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCTCGAGCTCTTACGGAGATGAATGGTAAAATGATTGCTGGGAAGCCTCTGTACGTTGCCCTTGCTCAGAGAAAGGAAGAGAGAAGAGCTAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCGATGACACCTTCTGTTGCACCACGGATGCCACTTTATCCTCCTGGTGCTCCTGGTTTAGGGCAGCAATTTATGTACGGGCAAGGACCCCCAGCCATGATTCCCCCACAGGCTGGATTTGGCTACCAGCAGCAACTTGTTCCTGGGATGAGGCCTGGTGGTGCTCCAATGCCTTTAGCTGAACTAAACAAGTTTTTCTAA 1458 0.454 MAQIQVQHQSAVSAPPQNGVAAAPSPPLPVGAANGTNQFVTTSLYVGDLDPEVDERHLYDLFNQVGQVVSVRVCSDLTTRRSLGYGYVNYSNPQDAARAIDVLNFTPLNNKPIRIMYSYRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGQSKGYGFVQFDTEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALGKTTFNNVYVKNLSESVTDDDLKKIFGEYGTITSAVVMRDAYGRSKCFGFVNFENPEDAAKAVESLNGKKIDDKEWYVGKAQKKSERENELRRRFEQTVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSITSCKVMRDPNGISRGSGFVAFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTPSVAPRMPLYPPGAPGLGQQFMYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPLAELNKFF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03173 485 CDD RRM2_I_PABPs 128 204 IPR045305 -
Adu06g03173 485 Gene3D - 132 210 IPR012677 -
Adu06g03173 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Adu06g03173 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 401 IPR000504 GO:0003723
Adu06g03173 485 MobiDBLite consensus disorder prediction 1 16 - -
Adu06g03173 485 CDD RRM1_I_PABPs 43 122 - -
Adu06g03173 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Adu06g03173 485 PANTHER RNA BINDING PROTEIN 31 477 - -
Adu06g03173 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Adu06g03173 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 394 IPR000504 GO:0003723
Adu06g03173 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Adu06g03173 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 291 IPR000504 GO:0003723
Adu06g03173 485 SMART rrm1_1 325 397 IPR000504 GO:0003723
Adu06g03173 485 SMART rrm1_1 43 116 IPR000504 GO:0003723
Adu06g03173 485 SMART rrm1_1 222 294 IPR000504 GO:0003723
Adu06g03173 485 SMART rrm1_1 131 203 IPR000504 GO:0003723
Adu06g03173 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 207 IPR000504 GO:0003723
Adu06g03173 485 MobiDBLite consensus disorder prediction 1 28 - -
Adu06g03173 485 PANTHER POLYADENYLATE-BINDING PROTEIN 31 477 - -
Adu06g03173 485 SUPERFAMILY RNA-binding domain, RBD 221 405 IPR035979 GO:0003676
Adu06g03173 485 SUPERFAMILY RNA-binding domain, RBD 42 211 IPR035979 GO:0003676
Adu06g03173 485 CDD RRM3_I_PABPs 220 299 - -
Adu06g03173 485 SMART rrm2_1 43 116 IPR003954 GO:0003676
Adu06g03173 485 SMART rrm2_1 222 294 IPR003954 GO:0003676
Adu06g03173 485 SMART rrm2_1 131 203 IPR003954 GO:0003676
Adu06g03173 485 SMART rrm2_1 325 397 IPR003954 GO:0003676
Adu06g03173 485 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 43 475 IPR006515 GO:0003723
Adu06g03173 485 CDD RRM4_I_PABPs 323 401 - -
Adu06g03173 485 Gene3D - 311 414 IPR012677 -
Adu06g03173 485 Gene3D - 1 131 IPR012677 -
Adu06g03173 485 Gene3D - 211 310 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03173 Adu-Chr6 110000247 110003612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g03173 1 477 Eukaryotic Initiation Factors Gene Family AT4G34110 71.069 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g03173 K13126 - gmx:100784442 832.787