LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu06g03083	ATGCCACAGTATCAACCATCTAAAGAAACTTCAAAGCTTGATGCTTTTTTGGGTCTAGATAATAAGGCCCTGTTGAAAGTTGCTGAGAAATTGGAGCTGAAGGTGATGATTGAGGAAATGGAATCTTCAACAAGCATTGATGATGTTCCTGCAGTGTTCATTTGTCCAATTTCACTTGAGCCAATGCAAGAGCCAGTAACACTTTCAACTGGCCAAACCTATGAAAGATCCAACATCGTCAAATGGTTCTCACTTGGCCACAGAACTTGCCCCATAACAATGCAAGAGCTTTGGGATGATGATGATGGTGGTAATTCTCTCACACCAAACAACACTCTCAGCCACTTGATCCTCACTTGGTTCTCTCACAAGTACATAGCCATGAAGAAGAAATTGGAGGATGTTCAAGGTAGGGTTTCCGAACTCTTGGACACACTCAAGAAGGTTAAGGGTCAAGCTAGAGTTAGAGCTCTTAAGGAACTTCACAAACTTGTTGAATCTCATGTTGAAGCAAGGAAATCAGTGCTGGAGAATAATGGGGTTGCTTTGGTTTCTTCACTTTTGGGTCCATTTACTTCACATGCTGTTGGGTCAGAAGCAATTGGGATAATTGTGAATTTTGATTTGAGTTCTGAGTTGAAGAGGGATTTGGTGAATCCAGCTAAGGTGTCATTGTTGGTTGATATCATGAATGAGGGAACAATTGAGACCAAGATGAATTGTGCAAAGTTGATTCAAATTCTGCTGATGGAAGGTAAAAACGACATCCAAAATTATGAGATTGTTTCGAGTTTGAGTCTTTTGGTTGGGTTATTGAGGCTAATTAGGGATAAGAAACACCCAAATGGGGTCTTAATTGGTCTCAAATTACTCAAATCTATATGTTCATCATATGAATCAGTTAGAAGCTCAGTGGTAAGCATAGGAACAATTCCTCAATTGATTGAGTTATTACCAAATTGGAACAATGAGTGCTTAGAGATAGCACTCTATGTTCTTGATTTGTTGTCAACAATTCCAGAGGGTATTTTAGCATTGAAGCAATGTCCAAAGATTGTTCCAAATGTGGTGAAGTTGTTGATGAGAGTCTCAGAGAATTGCACACAATTTGCATTGTCAATATTGTTGGCTATTTACAAGATTGCCCCTGAAGAATGTGCATCACAGGCAGTGGAAGCTGGTTTGGCACCAAAGCTGTTGCTAGTGATTCAGAGTGGATGCAATCCAGTGTTGAAGCAGATGTCTTCTGAGTTCTTGAAAATGTGCAGTTTGAATTACTCTGCTAATATCTTGATTTCAAAGTGTATGCTTACCACAACAATACAATGA	1329	0.3943	MPQYQPSKETSKLDAFLGLDNKALLKVAEKLELKVMIEEMESSTSIDDVPAVFICPISLEPMQEPVTLSTGQTYERSNIVKWFSLGHRTCPITMQELWDDDDGGNSLTPNNTLSHLILTWFSHKYIAMKKKLEDVQGRVSELLDTLKKVKGQARVRALKELHKLVESHVEARKSVLENNGVALVSSLLGPFTSHAVGSEAIGIIVNFDLSSELKRDLVNPAKVSLLVDIMNEGTIETKMNCAKLIQILLMEGKNDIQNYEIVSSLSLLVGLLRLIRDKKHPNGVLIGLKLLKSICSSYESVRSSVVSIGTIPQLIELLPNWNNECLEIALYVLDLLSTIPEGILALKQCPKIVPNVVKLLMRVSENCTQFALSILLAIYKIAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSANILISKCMLTTTIQ	442

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu06g03083	442	SMART	Ubox_2	52	120	IPR003613	GO:0004842\|GO:0016567
	Adu06g03083	442	Pfam	U-box domain	49	124	IPR003613	GO:0004842\|GO:0016567
	Adu06g03083	442	Gene3D	-	132	433	IPR011989	-
	Adu06g03083	442	SUPERFAMILY	ARM repeat	139	424	IPR016024	-
	Adu06g03083	442	PANTHER	WDSAM1 PROTEIN	23	441	IPR045185	GO:0061630
	Adu06g03083	442	ProSiteProfiles	U-box domain profile.	48	127	IPR003613	GO:0004842\|GO:0016567
	Adu06g03083	442	CDD	RING-Ubox_PUB	53	95	IPR045210	-
	Adu06g03083	442	Coils	Coil	132	152	-	-
	Adu06g03083	442	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 30	23	441	-	-
	Adu06g03083	442	SUPERFAMILY	RING/U-box	41	122	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu06g03083	Adu-Chr6	108973291	108975188	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu06g03083	1	442	U-box Gene Family	AT3G49810	56.833	1.57e-175	497

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu06g03083	-		-	gmx:100803878	600.127

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