Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02998 ATGGAAGGAGCAGTTAGAGTGAAGGAAGAAGAATCGGAACACTCACAACCTCAACCTCGGGAAGGGTTGAACGACGCGTCTCCACCTCCGTTTCTAACGAAGACGTTCGACATGGTGGATGACTCTTCCATTGATTCCATTGTTTCTTGGAGCATTACTCGCAACTCCTTTGTTGTTTGGGACCCTCACAGCTTCTCCACTACCATCTTGCCTCGCTACTTCAAGCATTCCAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATGGATTTCGGAAAGTTGATCCTGATCGGTGGGAATTCGCTAACGAAGGTTTCTTGGCGGGACAGAAACACTTGTTGAAGACCATAAAGAGAAGAAGAAATGTATCTCAGGGAACACAGCAAAGAGGAGGTGGAGGTCCTTGTCTCGAGTTGGGGGAGTATGGATTGGAAGGTGAGGTTGAAAGGTTGAGGAGAGACCGGAATGTGTTGATGGCCGAAATCGTGAAGTTGAGGCAGCAACAGCATAATTCACGAAATGAGGTGCTTCTGATGGAGACAAGGTTGCAAGCCACAGAGAAGAAACAACAACAGATGATGACTTTCCTTGCCAAAGCTCTGAACAATCCATCTTTCATGCAGCATTTGGCTGATAAGAATTCCCAGAACACGCAATTGTTTGGCGTTGAAGTTAAAAGGAAGAGGAGACTAACAGCTAGCCCAAACGTGGATCCGGTGACAGCAGTAGCAGCAGTGCCTATTGAATCAGTAGTGGAGGACTATCCAAACCACGAACAAGAACTTGCAAATATCGAGTTCGAGATGGATACATTTTTCGCAACATCTTATGATACCGAGCCTAACGACGAAAATAATGACCCTGCATCAACAACTTCAGTATCCGGGGATACTATCTTGGAGGATTTTCTCAAGGAAGATTTGGTAACTGGGAACCCAAAGGATGAAGTTGTGATTGGTGATTGTTCAAGAACTGATATTCCTGCGGAGGATTTGGCAGCAACGCCTAAGGATTGGACTGAGGAATTGCAGGACCTTGTGAGTCATATGGAATATCTTGGTTCCAAACCTTAG 1074 0.4581 MEGAVRVKEEESEHSQPQPREGLNDASPPPFLTKTFDMVDDSSIDSIVSWSITRNSFVVWDPHSFSTTILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLKTIKRRRNVSQGTQQRGGGGPCLELGEYGLEGEVERLRRDRNVLMAEIVKLRQQQHNSRNEVLLMETRLQATEKKQQQMMTFLAKALNNPSFMQHLADKNSQNTQLFGVEVKRKRRLTASPNVDPVTAVAAVPIESVVEDYPNHEQELANIEFEMDTFFATSYDTEPNDENNDPASTTSVSGDTILEDFLKEDLVTGNPKDEVVIGDCSRTDIPAEDLAATPKDWTEELQDLVSHMEYLGSKP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02998 357 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu06g02998 357 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu06g02998 357 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu06g02998 357 MobiDBLite consensus disorder prediction 1 30 - -
Adu06g02998 357 Gene3D - 23 121 IPR036388 -
Adu06g02998 357 Coils Coil 148 168 - -
Adu06g02998 357 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu06g02998 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 319 IPR027725 -
Adu06g02998 357 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu06g02998 357 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 11 319 - -
Adu06g02998 357 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Adu06g02998 357 MobiDBLite consensus disorder prediction 1 18 - -
Adu06g02998 357 SUPERFAMILY "Winged helix" DNA-binding domain 27 120 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02998 Adu-Chr6 107984454 107987297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02998 17 357 HSF AT2G26150 52.478 3.72e-126 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Adu06g02998 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02998 K09419 - gmx:100778558 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02998 06 107984454 107987297 Adu08g00900 08 16507508 16510045 PCT