Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02978 ATGGAGGAAGAACCTGATACCTACAATCCTCGTACCGTTGAAGAGGTATTCCGTGATTTCAAGTCTCGCCGTACTGCTTTGATCAAAGCCCTCACCACTGGTAATTTATTTGATTTGTGTGAGCTCTGTGATACAGAAAAGGACAATCTTTGCCTGTATGGATTTCCTACCGAGGAGTGGGAAGTCAATCTGCCTGTTGAGGAGGTGCCTCCAGAGATTCCGGAGCCAACATTGGGTATTAACTTTGCCAGAGATGGGCTTGATAAACAGGAATGGCTATCTTTGGTTGCTGCTCATAGTGATGCTTGGATACTTGGTGTGGCTTTTTATTTTGGTGCTAGAGTTGGATTTGACAGGGCTGATAGGAAGAGACTATTTACTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACAGGAATGGGAAAGACACCGGCTTCTAATCATAGCAGTAACAAATCTAAATCAAACTCTAAGAAAGGTTCCGAGTCTAAGCCAAAGAATTCTAAGGCAACACAATCAAAGGACAAGGATGGTGAAGAACAGGGAGGAGACGTTCCTTGTGGGGCATGTGGAGAGAGCTATGACGACGGTTTCTGGATTTGCTGCGACATATGCGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCAAGGGCTGAACACATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGACAGTAA 726 0.4408 MEEEPDTYNPRTVEEVFRDFKSRRTALIKALTTGNLFDLCELCDTEKDNLCLYGFPTEEWEVNLPVEEVPPEIPEPTLGINFARDGLDKQEWLSLVAAHSDAWILGVAFYFGARVGFDRADRKRLFTMINDLPTIFEVVTGMGKTPASNHSSNKSKSNSKKGSESKPKNSKATQSKDKDGEEQGGDVPCGACGESYDDGFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02978 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 236 IPR013083 -
Adu06g02978 241 SUPERFAMILY FYVE/PHD zinc finger 179 238 IPR011011 -
Adu06g02978 241 Pfam Alfin 12 141 IPR021998 GO:0006355|GO:0042393
Adu06g02978 241 ProSiteProfiles Zinc finger PHD-type profile. 186 237 IPR019787 -
Adu06g02978 241 SMART PHD_3 188 235 IPR001965 -
Adu06g02978 241 CDD PHD_AL_plant 188 237 IPR044104 -
Adu06g02978 241 MobiDBLite consensus disorder prediction 157 184 - -
Adu06g02978 241 PANTHER CPG BINDING PROTEIN 5 240 IPR045104 GO:0006355|GO:0042393
Adu06g02978 241 ProSitePatterns Zinc finger PHD-type signature. 189 234 IPR019786 -
Adu06g02978 241 Pfam PHD-finger 189 237 IPR019787 -
Adu06g02978 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 5 240 - -
Adu06g02978 241 MobiDBLite consensus disorder prediction 143 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02978 Adu-Chr6 107666028 107676705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02978 1 240 Alfin-like Transcription Factor Family AT3G42790 66.932 8.30e-105 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Adu06g02978 Alfin 2.1e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02978 - - dzi:111285222 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02978 06 107666028 107676705 Adu06g02978 06 107666028 107676705 ECH