Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02883 ATGCGTGTTCTTGCTGTTGATGATGACCGAACATGTCTTATGGTTTTGAAGACTTTACTCCAGAAGTGCCATTATCAAGTAACAACCACAAACAGTGCAATAACAGCATTGAAACTATTGAGAGAGAAGAAGAACAAGTTTGATCTGGTAATCAGTGACGTTCACATGCCAGACATGGATGGTTTCAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACTTACCTGTCATAAATGATGATCCAAGAGTGATGATGAAGGGAATCATGCATGGAGCATGTTTCTATCTGGTGAAACCTGTTAGAATTGAGGAGCTGAAGAATATTTGGCAGCATGTAATTAGGAGGAACAAGCATGATTCCCAGGAGCCAGAAAAACCTAGTAACAACCACGAAAATCCTGATTCGGATCAGAGTTCAAAGGCAAATAAAAAGAGAAAGGAACAAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGATGAGAATGACCATGACAACGGTGATGATCCGTCGGCGCAAAAGAAGCCTCGCGTGGTTTGGTCCGTCGACTTGCACCGCAAATTTGTCACTGCCGTCGAGCAATTAGGCATTGACAAGGCTGTACCGAAAAAAATTCTTGACTTAATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGTCATCTTCAGAAATATAGGATTTTTCTGAGAAGAGTGAACAACATGTCAAACCAACAACACTCTAACATTGGATCAGGCTTCAGCAGTGCAGACACATCATATCTGAGAATGAATCCTCTAAGTGGAATTGGACAATTACAAACACTCAATAATAACTCTGGTTATGGCTTAAGATCTTTTTCACCTTCTAACATGCTTAATAGATTCAACACTCCTTCAGCTCTCAATGCTCATGGTTTCAATTCCAATGATAGCCAATTTCAGTTCCCATCTTCCGGCTTGCTCGGCCGCGGCCGCAGCAATAACAATCAGATTTATCTCCCCGGAGGAGGACTTAATTCTGTTCAAAACTTGAGCACTATCTTTGATTCTAAACAGAGTTTTTGTAGACAGAAACCAAGCTCTCCCATTTTGGGAGTTTCCAACAATGGTTTGATCTTGGAACAGAATCATCAAGGTGGAATCTATGATAATATTCCAAATTCTGTAGGATCTTCTTCCCAAGAACAAATTTCATTCCCTTCTTTACTTGATCATCATCATGGTAATAGTTGCAACAATGATATTTGGTCAAATGAATGCAACACTTTGATGAATTCTTCAACTTTTCAAGGTGGGAATCTTAGTGGTGCTTCATCAATCACTTCACTCTCTAGCCAATCCCATGATTCATTCACTGATTTGAATTTCCAAGGAGTGAATTTCACCAACATTAACAATAGTAACAATGTGCAATTTCAAGGGTGGAATAGTAACAATAATAACAATAATCAGAATGGAAATTACCATGCATTGAGTGGCCTTATTGATCCATTTTCAAATTCAAGCTTCAACAGAAACTTGGACTTTGATTTTTGTGATGCATCGCAAATGAAGCATGATGGGGTTATTGATTTGACTGAAGATTCTTCACTGAAGCCACATCAGTTGTACAAGACTCGGAACACTCACATTTCTAATAATGCTGGTTCCTTGGAAGACTTTGTCAATGAAATTATGAAACAGAAACAAGACAAGATTAAATTACCAGAAGGAGACTTCTTGTGTGACAATTATTCTACTGGTGGAACATCTATGTGA 1743 0.3924 MRVLAVDDDRTCLMVLKTLLQKCHYQVTTTNSAITALKLLREKKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVINDDPRVMMKGIMHGACFYLVKPVRIEELKNIWQHVIRRNKHDSQEPEKPSNNHENPDSDQSSKANKKRKEQEEEEEEEEEEEDENDHDNGDDPSAQKKPRVVWSVDLHRKFVTAVEQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRIFLRRVNNMSNQQHSNIGSGFSSADTSYLRMNPLSGIGQLQTLNNNSGYGLRSFSPSNMLNRFNTPSALNAHGFNSNDSQFQFPSSGLLGRGRSNNNQIYLPGGGLNSVQNLSTIFDSKQSFCRQKPSSPILGVSNNGLILEQNHQGGIYDNIPNSVGSSSQEQISFPSLLDHHHGNSCNNDIWSNECNTLMNSSTFQGGNLSGASSITSLSSQSHDSFTDLNFQGVNFTNINNSNNVQFQGWNSNNNNNNQNGNYHALSGLIDPFSNSSFNRNLDFDFCDASQMKHDGVIDLTEDSSLKPHQLYKTRNTHISNNAGSLEDFVNEIMKQKQDKIKLPEGDFLCDNYSTGGTSM 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02883 580 Pfam Myb-like DNA-binding domain 177 227 IPR001005 -
Adu06g02883 580 MobiDBLite consensus disorder prediction 116 149 - -
Adu06g02883 580 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 175 228 IPR006447 GO:0003677
Adu06g02883 580 SUPERFAMILY Homeodomain-like 173 232 IPR009057 -
Adu06g02883 580 SUPERFAMILY CheY-like 1 121 IPR011006 -
Adu06g02883 580 PIRSF RR_ARR_type-B 1 577 IPR017053 GO:0003677|GO:0003700|GO:0009736
Adu06g02883 580 Gene3D - 1 133 - -
Adu06g02883 580 Gene3D - 171 234 - -
Adu06g02883 580 MobiDBLite consensus disorder prediction 116 177 - -
Adu06g02883 580 SMART REC_2 1 109 IPR001789 GO:0000160
Adu06g02883 580 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 554 - -
Adu06g02883 580 ProSiteProfiles Response regulatory domain profile. 2 113 IPR001789 GO:0000160
Adu06g02883 580 Coils Coil 136 166 - -
Adu06g02883 580 MobiDBLite consensus disorder prediction 150 166 - -
Adu06g02883 580 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 554 IPR045279 GO:0009736
Adu06g02883 580 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 231 IPR017930 -
Adu06g02883 580 Pfam Response regulator receiver domain 3 107 IPR001789 GO:0000160
Adu06g02883 580 CDD REC_typeB_ARR-like 3 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02883 Adu-Chr6 106419115 106422699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02883 1 303 Response Regulator Gene Family AT2G25180 53.605 1.68e-100 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Adu06g02883 Response_reg 2.5e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02883 - K14491 adu:110273068 1092.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02883 06 106419115 106422699 Adu10g01839 10 84306893 84309684 PCT