Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02880 ATGGAAACACTACTTCCTACCAATAACAAACACTTCTTCTCTACTCCTCCAACTCCATGTACACCACAACACAAGAATCAACAATCTTTGCAAGACGAAGAAGCCGAAGAAGAAAAGGATACAAACATAGATAATAACAATAATGCTTTGTTATTATTGGATTTGAATGTCTCCGGCAACCAAGACGATCTGGACGACGGATCGCCCGAACTCAACCTCATAACTTGTTTGGATATGGATTCATTATCCAATCACAAAAATAATTCTCCATCAGAAGAAGAACCGTCATTATTACCAGACAAATCGAATTGTCTTGGTGACGGTTCATCTTCTTCCGACGTAGAAATGAGGGTTTTTTCTTGCAATTATTGCCAGAGAAAATTCTACAGTTCGCAAGCACTTGGCGGACACCAAAACGCTCACAAAAGGGAGCGATCGATAGCCAAGAGAGGCCACAGATTCGGGACGCAAATACTCTCCTCTACACCAGCCTTTGGAATGATTCCACTTCGCTACGCCGCCGCCTCCGCCGTCAGCATAGCGTCTCTGCCGCTCCACGGCAGCGCGTGTGGCAACAGAGGACTCGGAATTCAAGCTCATGCAATGATCCACAAACCTTCACACAATGGACACCATCACGGTTGGTCAAGACCCCTTATTGATCCACAACCGGGTGTTGCAAAACTGGCTATGGCGGATTTTCATCGAACTTCGGCATTATCGGCGTCTAGAGGAAGCGTCGGAAGATTTGAAGTGGTGAACACTGTGATGAATTCAGCATCGCCAAATAAAGAAATCAGTGGGTTTTTTCTTAGTAGTGGAACTCATCGTCATCATCAAGATGAAATCAAGCACCTTGATTTGTCTCTCAAGCTTTAA 879 0.446 METLLPTNNKHFFSTPPTPCTPQHKNQQSLQDEEAEEEKDTNIDNNNNALLLLDLNVSGNQDDLDDGSPELNLITCLDMDSLSNHKNNSPSEEEPSLLPDKSNCLGDGSSSSDVEMRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQILSSTPAFGMIPLRYAAASAVSIASLPLHGSACGNRGLGIQAHAMIHKPSHNGHHHGWSRPLIDPQPGVAKLAMADFHRTSALSASRGSVGRFEVVNTVMNSASPNKEISGFFLSSGTHRHHQDEIKHLDLSLKL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02880 292 Gene3D Classic Zinc Finger 103 164 - -
Adu06g02880 292 MobiDBLite consensus disorder prediction 84 110 - -
Adu06g02880 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Adu06g02880 292 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Adu06g02880 292 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 292 IPR044246 GO:0009788
Adu06g02880 292 MobiDBLite consensus disorder prediction 1 28 - -
Adu06g02880 292 SUPERFAMILY beta-beta-alpha zinc fingers 117 146 IPR036236 -
Adu06g02880 292 MobiDBLite consensus disorder prediction 1 45 - -
Adu06g02880 292 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02880 Adu-Chr6 106361043 106361973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02880 32 292 C2H2 Transcription Factor Family AT5G10970 35.766 1.36e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu06g02880 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02880 - - gmx:100809569 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02880 06 106361043 106361973 Adu10g01835 10 84122114 84122854 PCT