Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02877 ATGGCAAGATCACAACAGAGATACCGAGGTGTGAGACAAAGGCACTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCCATTTTGAAGACAAGGATATGGCTTGGAACATTTGAGACAGCTGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGCTTATGTGTGGTGCAAGAGCAAGAACCAATTTCCCTTTCAACCCTAACACCACCAACAACGTCTCTCAATCTTCTTCTTCAAAGCTTCTCTCACCAACTTTGACCGCAAAATTGCACAGATGCTACATGGCTTCTTTGCAATTAACTCGCCAACAAGATCCTCAAAGGGTACTAGTGCCCAATCATAATGATAATCATAATAATAGTAACTACTCCAAAGTGCAAATTAGTGAAAAGGGTGATTCAATTGTGTCATCAAAAAAGAGAACACATGATGAGGAGGAGGAAGAGGTGAAACAAGATTCAGAGGCCAATTGGGTTGTCAAGAAAGTTAAGGGTATGGACCAAATTGGTCCACAGTTCAAGCCACTTGAAGAACATCACATTGACCAAATGATTGAGGAGCTTCTTCATTATGGCTCTATTGAACTTTGTTCTGTTTTTCCACATCAACATATTTAA 618 0.4159 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNTTNNVSQSSSSKLLSPTLTAKLHRCYMASLQLTRQQDPQRVLVPNHNDNHNNSNYSKVQISEKGDSIVSSKKRTHDEEEEEVKQDSEANWVVKKVKGMDQIGPQFKPLEEHHIDQMIEELLHYGSIELCSVFPHQHI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02877 205 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Adu06g02877 205 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Adu06g02877 205 MobiDBLite consensus disorder prediction 113 133 - -
Adu06g02877 205 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Adu06g02877 205 MobiDBLite consensus disorder prediction 113 154 - -
Adu06g02877 205 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 199 - -
Adu06g02877 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 199 - -
Adu06g02877 205 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Adu06g02877 205 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Adu06g02877 205 MobiDBLite consensus disorder prediction 134 154 - -
Adu06g02877 205 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Adu06g02877 205 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Adu06g02877 205 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02877 Adu-Chr6 106285525 106286439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02877 1 205 AP2-EREBP Transcription Factor Family AT5G25190 58.537 4.40e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu06g02877 AP2 6.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02877 - - aip:107605402 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02877 06 106285525 106286439 Adu10g01828 10 83826272 83829356 PCT